HHsearch alignment for GI: 254780382 and conserved domain: COG0513

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].
Probab=100.00  E-value=0  Score=639.27  Aligned_cols=366  Identities=48%  Similarity=0.807  Sum_probs=338.8

Q ss_pred             CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECC
Q ss_conf             98436698889999999787987898999999999769979998279851789999999999860652147827999828
Q gi|254780382|r    1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP   80 (465)
Q Consensus         1 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~P   80 (465)
T Consensus        29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~iP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~i~~~~~~~~~~-aLil~P  107 (513)
T COG0513          29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVS-ALILAP  107 (513)
T ss_pred             CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCC-EEEECC
T ss_conf             7976659999999999965989989899965877636999799868987178999999999974004557775-699779


Q ss_pred             CHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCC
Q ss_conf             5899999999987410233-322100001222222222221011221022102333320000001210010255100000
Q gi|254780382|r   81 TRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRML  159 (465)
Q Consensus        81 treLa~Qi~~~~~~~~~~~-~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l~  159 (465)
T Consensus       108 TRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~g~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrml  187 (513)
T COG0513         108 TRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRML  187 (513)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCCCEEEEEECCHHHHC
T ss_conf             99999999999999986245842999989989899999872499899979608999986488554650189967617663


Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             00100357887543102222233343211222211112222210013444321--2346421111122221102444321
Q gi|254780382|r  160 DMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS--TAETIEHCFVATYAQYSKKCALLQQ  237 (465)
Q Consensus       160 ~~gf~~~i~~i~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~--~~~~i~~~~~~~~~~~~~k~~~l~~  237 (465)
T Consensus       188 d~gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~-~k~~~L~~  266 (513)
T COG0513         188 DMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEE-EKLELLLK  266 (513)
T ss_pred             CCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEEECCHH-HHHHHHHH
T ss_conf             88768999999973897748999982489899999999736880799643223353004707999808567-79999999


Q ss_pred             CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCEE
Q ss_conf             01223456506776213443222222222233222223454203332344442013552388884664644078876500
Q gi|254780382|r  238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV  317 (465)
Q Consensus       238 l~~~~~~~~k~iIF~~t~~~~~~l~~~L~~~g~~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~GiDip~v~~V  317 (465)
T Consensus       267 ll~~~~~-~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~iLVaTDvaaRGiDi~~v~~V  345 (513)
T COG0513         267 LLKDEDE-GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHV  345 (513)
T ss_pred             HHHCCCC-CEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCEE
T ss_conf             9827888-839999576776999999999789659997388998899999999975998989980654468996667479


Q ss_pred             EEECCCCCHHHHHHHHHCCCCCCCCEEEEEEECHH-HHHHHHHHHHHHCCCCC
Q ss_conf             20024677899887521024588853999977888-99999999999623123
Q gi|254780382|r  318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIEKLIEKKVD  369 (465)
Q Consensus       318 I~~d~P~~~~~y~hR~GR~gR~g~~G~~i~~~~~~-d~~~~~~i~~~~~~~~~  369 (465)
T Consensus       346 inyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~i~~~~~~~~~  398 (513)
T COG0513         346 INYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP  398 (513)
T ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCC
T ss_conf             97879998041317345343489987279985562349999999998753244