HHsearch alignment for GI: 254780382 and conserved domain: COG0513
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=639.27 Aligned_cols=366 Identities=48% Similarity=0.807 Sum_probs=338.8
Q ss_pred CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECC
Q ss_conf 98436698889999999787987898999999999769979998279851789999999999860652147827999828
Q gi|254780382|r 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80 (465)
Q Consensus 1 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~P 80 (465)
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~iP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~i~~~~~~~~~~-aLil~P 107 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVS-ALILAP 107 (513)
T ss_pred CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCC-EEEECC
T ss_conf 7976659999999999965989989899965877636999799868987178999999999974004557775-699779
Q ss_pred CHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCC
Q ss_conf 5899999999987410233-322100001222222222221011221022102333320000001210010255100000
Q gi|254780382|r 81 TRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRML 159 (465)
Q Consensus 81 treLa~Qi~~~~~~~~~~~-~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l~ 159 (465)
T Consensus 108 TRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~g~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrml 187 (513)
T COG0513 108 TRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRML 187 (513)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCCCEEEEEECCHHHHC
T ss_conf 99999999999999986245842999989989899999872499899979608999986488554650189967617663
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 00100357887543102222233343211222211112222210013444321--2346421111122221102444321
Q gi|254780382|r 160 DMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS--TAETIEHCFVATYAQYSKKCALLQQ 237 (465)
Q Consensus 160 ~~gf~~~i~~i~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~--~~~~i~~~~~~~~~~~~~k~~~l~~ 237 (465)
T Consensus 188 d~gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~-~k~~~L~~ 266 (513)
T COG0513 188 DMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEE-EKLELLLK 266 (513)
T ss_pred CCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEEECCHH-HHHHHHHH
T ss_conf 88768999999973897748999982489899999999736880799643223353004707999808567-79999999
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCEE
Q ss_conf 01223456506776213443222222222233222223454203332344442013552388884664644078876500
Q gi|254780382|r 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317 (465)
Q Consensus 238 l~~~~~~~~k~iIF~~t~~~~~~l~~~L~~~g~~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~GiDip~v~~V 317 (465)
T Consensus 267 ll~~~~~-~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~iLVaTDvaaRGiDi~~v~~V 345 (513)
T COG0513 267 LLKDEDE-GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHV 345 (513)
T ss_pred HHHCCCC-CEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCEE
T ss_conf 9827888-839999576776999999999789659997388998899999999975998989980654468996667479
Q ss_pred EEECCCCCHHHHHHHHHCCCCCCCCEEEEEEECHH-HHHHHHHHHHHHCCCCC
Q ss_conf 20024677899887521024588853999977888-99999999999623123
Q gi|254780382|r 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE-DIKHIDAIEKLIEKKVD 369 (465)
Q Consensus 318 I~~d~P~~~~~y~hR~GR~gR~g~~G~~i~~~~~~-d~~~~~~i~~~~~~~~~ 369 (465)
T Consensus 346 inyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~i~~~~~~~~~ 398 (513)
T COG0513 346 INYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCC
T ss_conf 97879998041317345343489987279985562349999999998753244