HHsearch alignment for GI: 254780382 and conserved domain: COG0514
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=370.57 Aligned_cols=333 Identities=26% Similarity=0.397 Sum_probs=250.9
Q ss_pred HHHHHHHHH-CCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHH
Q ss_conf 899999997-8798789899999999976997999827985178999999999986065214782799982858999999
Q gi|254780382|r 10 PKVVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQV 88 (465)
Q Consensus 10 ~~l~~~l~~-~~~~~pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi 88 (465)
T Consensus 3 ~~~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~--~G-------~TLVVSPLiSLM~DQ 73 (590)
T COG0514 3 EEAQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL--EG-------LTLVVSPLISLMKDQ 73 (590)
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHC--CC-------CEEEECCHHHHHHHH
T ss_conf 478999999709130388889999999658867998538987106743678865--99-------789978568889999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCC---CCCCH-HHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCCCCC--
Q ss_conf 99987410233322100001222222222---22101-1221022102333320000001210010255100000001--
Q gi|254780382|r 89 ADNFEKYGKNYNLTVALLIGGIPFEAQNK---KLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMG-- 162 (465)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~gg~~~~~~~~---~l~~~-~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l~~~g-- 162 (465)
T Consensus 74 V~~l~~----~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhd 149 (590)
T COG0514 74 VDQLEA----AGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHD 149 (590)
T ss_pred HHHHHH----CCCEEEHHHCCCCHHHHHHHHHHHHCCCEEEEEECCHHHCCHHHHHHHHHCCCCEEEECHHHHHHHCCCC
T ss_conf 999997----5965204424367877999999986496459998813631768999997088756996217777641774
Q ss_pred CHHHHHHHHH---HHCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 0035788754---310222223334321122221111222--22100134443212346421111122221102444321
Q gi|254780382|r 163 FIPYIQNITS---LVPFTRQTLLFSATMTDELQKVSENFL--QNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQ 237 (465)
Q Consensus 163 f~~~i~~i~~---~~~~~~q~i~~SAT~~~~v~~l~~~~l--~~~~~i~v~~~~~~~~~i~~~~~~~~~~~~~k~~~l~~ 237 (465)
T Consensus 150 FRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~-~~sf--dRpNi~~~v~~~~-~~~~q~~fi~~ 224 (590)
T COG0514 150 FRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIF-RGSF--DRPNLALKVVEKG-EPSDQLAFLAT 224 (590)
T ss_pred CCHHHHHHHHHHHHCC-CCCEEEEECCCCHHHHHHHHHHHCCCCCCEE-EECC--CCCHHHHHHHHCC-CHHHHHHHHHH
T ss_conf 3776899999985179-9977997378986789999998467886648-7158--9852345564256-47888999874
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCEE
Q ss_conf 01223456506776213443222222222233222223454203332344442013552388884664644078876500
Q gi|254780382|r 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317 (465)
Q Consensus 238 l~~~~~~~~k~iIF~~t~~~~~~l~~~L~~~g~~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~GiDip~v~~V 317 (465)
T Consensus 225 ~--~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfV 302 (590)
T COG0514 225 V--LPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFV 302 (590)
T ss_pred H--CCCCCCCEEEEEEEHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEE
T ss_conf 1--32468972899933775999999999779725775189889999999999716998689996462477678884079
Q ss_pred EEECCCCCHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHH
Q ss_conf 200246778998875210245888539999778889999999999
Q gi|254780382|r 318 FNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEK 362 (465)
Q Consensus 318 I~~d~P~~~~~y~hR~GR~gR~g~~G~~i~~~~~~d~~~~~~i~~ 362 (465)
T Consensus 303 iH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~ 347 (590)
T COG0514 303 IHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIE 347 (590)
T ss_pred EEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHH
T ss_conf 980699898999999713567877021788606300799999998