HHsearch alignment for GI: 254780382 and conserved domain: COG0553

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair].
Probab=96.79  E-value=0.0024  Score=40.42  Aligned_cols=136  Identities=23%  Similarity=0.292  Sum_probs=74.8

Q ss_pred             CCCCCHHHHHHHHHHH-----CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             9878989999999997-----69979998279851789999999999860652147827999828589999999998741
Q gi|254780382|r   21 YVKPTPIQIKTIPLVL-----QRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKY   95 (465)
Q Consensus        21 ~~~pt~iQ~~~i~~~l-----~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~   95 (465)
T Consensus       336 ~~~lr~yq~~g~~wl~~~l~~~~~~~ilad~mglGKTiq~i-~~l~~~~~~~~-~~~~~~liv~p~-s~~~nw~~e~~k~  412 (866)
T COG0553         336 SAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTI-ALLLSLLESIK-VYLGPALIVVPA-SLLSNWKREFEKF  412 (866)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHH-HHHHHHHHHHC-CCCCCEEEECCH-HHHHHHHHHHHHH
T ss_conf             01104889986699999877623687757523342199999-99877776401-357872687147-7776799999861


Q ss_pred             CCCCCCCCCCCCCCCC-CC---CCCCCCCCH-----HHHHHCCCCHHHHHH-HCCCCCCCCCEEECCCCCCCCCC
Q ss_conf             0233322100001222-22---222222101-----122102210233332-00000012100102551000000
Q gi|254780382|r   96 GKNYNLTVALLIGGIP-FE---AQNKKLERG-----ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLD  160 (465)
Q Consensus        96 ~~~~~l~~~~~~gg~~-~~---~~~~~l~~~-----~~IiV~TP~rl~~~l-~~~~~~l~~~~~lViDEah~l~~  160 (465)
T Consensus       413 ~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn  486 (866)
T COG0553         413 APDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKN  486 (866)
T ss_pred             CCHHHH-HHHHCCCCCCCCHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             412100-23211531121036999999986213301018999999999750205542236776989978875404