HHsearch alignment for GI: 254780382 and conserved domain: COG0556
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair].
Probab=99.93 E-value=4.4e-25 Score=180.72 Aligned_cols=129 Identities=24% Similarity=0.388 Sum_probs=112.5
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 11222211024443210122345650677621344322222222223322222345420333234444201355238888
Q gi|254780382|r 222 VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVA 301 (465)
Q Consensus 222 ~~~~~~~~~k~~~l~~l~~~~~~~~k~iIF~~t~~~~~~l~~~L~~~g~~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~ 301 (465)
T Consensus 423 ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVG 502 (663)
T COG0556 423 IEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVG 502 (663)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 26514877478999999999964972999843688899999999866964786424403899999999975778748985
Q ss_pred HHHHHHHHCCCCCCEEEEEC-----CCCCHHHHHHHHHCCCCCCCCEEEEEEECH
Q ss_conf 46646440788765002002-----467789988752102458885399997788
Q gi|254780382|r 302 SDLAARGLDIPDVGHVFNFD-----VPNRAENYIHRIGRTGRAGRHGKAFTLVAK 351 (465)
Q Consensus 302 Td~~~~GiDip~v~~VI~~d-----~P~~~~~y~hR~GR~gR~g~~G~~i~~~~~ 351 (465)
T Consensus 503 INLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAAR-N~~GkvIlYAD~ 556 (663)
T COG0556 503 INLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKVILYADK 556 (663)
T ss_pred EHHHHCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHH-CCCCEEEEECCH
T ss_conf 013313478864557988606854443453259999878863-579739997101