HHsearch alignment for GI: 254780382 and conserved domain: COG0610

>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].
Probab=99.19  E-value=4.3e-09  Score=77.52  Aligned_cols=298  Identities=19%  Similarity=0.296  Sum_probs=147.1

Q ss_pred             CCEEEECCCCCCHHHH-HHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9799982798517899-999999998606521478279998285899999999987410233322100001222222222
Q gi|254780382|r   39 HDVCGIAQTGTGKTAS-FVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK  117 (465)
Q Consensus        39 ~dvi~~apTGsGKT~~-~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~~~~~~l~~~~~~gg~~~~~~~~  117 (465)
T Consensus       274 ~~G~IWHtqGSGKTltm~~~A--~~l~~~---~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~  344 (962)
T COG0610         274 KGGYIWHTQGSGKTLTMFKLA--RLLLEL---PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKE  344 (962)
T ss_pred             CCEEEEECCCCCHHHHHHHHH--HHHHHC---CCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCC----CCCCHHHHHH
T ss_conf             723898406983789999999--999836---5999699996728899999999999887632044----4457999999


Q ss_pred             CCCCHH-HHHHCCCCHHHHHHHCC-CCCCCCCE-EECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC--C-
Q ss_conf             221011-22102210233332000-00012100-102551000000010035788754310222223334321122--2-
Q gi|254780382|r  118 KLERGA-DVLICTPGRILDHFNRG-KLLMNNIE-ILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE--L-  191 (465)
Q Consensus       118 ~l~~~~-~IiV~TP~rl~~~l~~~-~~~l~~~~-~lViDEah~l~~~gf~~~i~~i~~~~~~~~q~i~~SAT~~~~--v-  191 (465)
T Consensus       345 ~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ-~G~~--~~~~~~~~~-~a~~~gFTGTPi~~~d~~  420 (962)
T COG0610         345 LLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ-YGEL--AKLLKKALK-KAIFIGFTGTPIFKEDKD  420 (962)
T ss_pred             HHHCCCCCEEEEEECCCCHHHHCCCCCCCCCCCEEEEEECCCCCC-CHHH--HHHHHHHHC-CCEEEEEECCCCCCCCCC
T ss_conf             986589848999710264333333200047876799986401035-6078--999998703-670897517856402242


Q ss_pred             --CCCCCCCCCC-------------CCCCCCC-CCCCCCCCCCCC--CCCCCC---------CC--------------CH
Q ss_conf             --2111122222-------------1001344-432123464211--111222---------21--------------10
Q gi|254780382|r  192 --QKVSENFLQN-------------PKRIEVN-TPSSTAETIEHC--FVATYA---------QY--------------SK  230 (465)
Q Consensus       192 --~~l~~~~l~~-------------~~~i~v~-~~~~~~~~i~~~--~~~~~~---------~~--------------~~  230 (465)
T Consensus       421 tt~~~fg~ylh~Y~i~~aI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r  500 (962)
T COG0610         421 TTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVR  500 (962)
T ss_pred             CHHHHHCCEEEEEECCHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_conf             03555174479986522323576332584031234532001245666669998422799999999987555687514488


Q ss_pred             HH----HHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC-----------C--------C----CCCCCCCCCCHHH
Q ss_conf             24----443210122345650677621344322222222223-----------3--------2----2222345420333
Q gi|254780382|r  231 KC----ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ-----------G--------F----SVCAIHGNIDQRS  283 (465)
Q Consensus       231 k~----~~l~~l~~~~~~~~k~iIF~~t~~~~~~l~~~L~~~-----------g--------~----~v~~lhg~l~~~~  283 (465)
T Consensus       501 ~~~~a~~~~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~  579 (962)
T COG0610         501 LIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKL-KDE  579 (962)
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH-HHH
T ss_conf             9999999999998611558359999841687877678887751556665300528999861322320234455777-777


Q ss_pred             HHHHHHH--HCCCCCEEEEEHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCC--C--CCEEEEEEECH
Q ss_conf             2344442--0135523888846646440788765002002467789988752102458--8--85399997788
Q gi|254780382|r  284 RMKILSN--FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--G--RHGKAFTLVAK  351 (465)
Q Consensus       284 R~~~~~~--F~~g~~~vLV~Td~~~~GiDip~v~~VI~~d~P~~~~~y~hR~GR~gR~--g--~~G~~i~~~~~  351 (465)
T Consensus       580 ~~~~~~r~~~~~d~~kllIV~dMlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g~  652 (962)
T COG0610         580 KKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRGL  652 (962)
T ss_pred             HHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCEEE-ECCCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCCH
T ss_conf             6533232127577876899977620467754201267-445544331899998864588788889579978146