HHsearch alignment for GI: 254780382 and conserved domain: COG1110

>COG1110 Reverse gyrase [DNA replication, recombination, and repair].
Probab=99.97  E-value=2.1e-29  Score=208.56  Aligned_cols=280  Identities=23%  Similarity=0.387  Sum_probs=189.5

Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCC
Q ss_conf             87987898999999999769979998279851789999999999860652147827999828589999999998741023
Q gi|254780382|r   19 AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN   98 (465)
Q Consensus        19 ~~~~~pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~~~~   98 (465)
T Consensus        79 ~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTT-fg~~~sl~~a-----~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~  151 (1187)
T COG1110          79 TGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTT-FGLLMSLYLA-----KKGKRVYIIVPTTTLVRQVYERLKKFAED  151 (1187)
T ss_pred             HCC-CCHHHHHHHHHHHHCCCCEEEECCCCCCHHH-HHHHHHHHHH-----HCCCEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf             389-8607889999998737844898278876547-9999999987-----55874999966789999999999998865


Q ss_pred             CC-CCCCC-CCCCCCCCCCC---CCCCC-HHHHHHCCCCHHHHHHHCCCCCCC--CCEEECCCCCCCCCC----------
Q ss_conf             33-22100-00122222222---22210-112210221023333200000012--100102551000000----------
Q gi|254780382|r   99 YN-LTVAL-LIGGIPFEAQN---KKLER-GADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLD----------  160 (465)
Q Consensus        99 ~~-l~~~~-~~gg~~~~~~~---~~l~~-~~~IiV~TP~rl~~~l~~~~~~l~--~~~~lViDEah~l~~----------  160 (465)
T Consensus       152 ~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs----~FL~k~~e~L~~~kFdfifVDDVDA~LkaskNvDriL~  227 (1187)
T COG1110         152 AGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTS----QFLSKRFEELSKLKFDFIFVDDVDAILKASKNVDRLLR  227 (1187)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEH----HHHHHHHHHHCCCCCCEEEECCHHHHHHCCCCHHHHHH
T ss_conf             37852466531236657799999998659963999747----87886699840457778998047889863444888999


Q ss_pred             -CCCHHH-H------HHHHHHH------------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             -010035-7------8875431------------------------0222223334321122221111222221001344
Q gi|254780382|r  161 -MGFIPY-I------QNITSLV------------------------PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN  208 (465)
Q Consensus       161 -~gf~~~-i------~~i~~~~------------------------~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~  208 (465)
T Consensus       228 LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R--~~LfReLlgFevG  305 (1187)
T COG1110         228 LLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSR--LKLFRELLGFEVG  305 (1187)
T ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCH--HHHHHHHHCCCCC
T ss_conf             80888788888899999999863223677899999988888877504773699960557877743--8899998398567


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECC---CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             4321234642111112222110244432101223456506776213---4432222222222332222234542033323
Q gi|254780382|r  209 TPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ---KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM  285 (465)
Q Consensus       209 ~~~~~~~~i~~~~~~~~~~~~~k~~~l~~l~~~~~~~~k~iIF~~t---~~~~~~l~~~L~~~g~~v~~lhg~l~~~~R~  285 (465)
T Consensus       306 ~~~~~LRNIvD~y~~~-~~~e~----~~elvk~l--G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~~-----~  373 (1187)
T COG1110         306 SGGEGLRNIVDIYVES-ESLEK----VVELVKKL--GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAEK-----E  373 (1187)
T ss_pred             CCCHHHHHEEEEECCC-CCHHH----HHHHHHHH--CCCEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECCC-----H
T ss_conf             6403130004420368-63788----99999984--89749999717738999999999986696079862320-----2


Q ss_pred             HHHHHHCCCCCEEEEEH----HHHHHHHCCCC-CCEEEEECCC
Q ss_conf             44442013552388884----66464407887-6500200246
Q gi|254780382|r  286 KILSNFKEGTIQLMVAS----DLAARGLDIPD-VGHVFNFDVP  323 (465)
Q Consensus       286 ~~~~~F~~g~~~vLV~T----d~~~~GiDip~-v~~VI~~d~P  323 (465)
T Consensus       374 ~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP  416 (1187)
T COG1110         374 EALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP  416 (1187)
T ss_pred             HHHHHHCCCCEEEEEEECCCCCCEEECCCCHHHEEEEEEECCC
T ss_conf             2456650676017998502134302247743454578995587