HHsearch alignment for GI: 254780382 and conserved domain: COG1110
>COG1110 Reverse gyrase [DNA replication, recombination, and repair].
Probab=99.97 E-value=2.1e-29 Score=208.56 Aligned_cols=280 Identities=23% Similarity=0.387 Sum_probs=189.5
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCC
Q ss_conf 87987898999999999769979998279851789999999999860652147827999828589999999998741023
Q gi|254780382|r 19 AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN 98 (465)
Q Consensus 19 ~~~~~pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~~~~ 98 (465)
T Consensus 79 ~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTT-fg~~~sl~~a-----~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~ 151 (1187)
T COG1110 79 TGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTT-FGLLMSLYLA-----KKGKRVYIIVPTTTLVRQVYERLKKFAED 151 (1187)
T ss_pred HCC-CCHHHHHHHHHHHHCCCCEEEECCCCCCHHH-HHHHHHHHHH-----HCCCEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 389-8607889999998737844898278876547-9999999987-----55874999966789999999999998865
Q ss_pred CC-CCCCC-CCCCCCCCCCC---CCCCC-HHHHHHCCCCHHHHHHHCCCCCCC--CCEEECCCCCCCCCC----------
Q ss_conf 33-22100-00122222222---22210-112210221023333200000012--100102551000000----------
Q gi|254780382|r 99 YN-LTVAL-LIGGIPFEAQN---KKLER-GADVLICTPGRILDHFNRGKLLMN--NIEILVIDEADRMLD---------- 160 (465)
Q Consensus 99 ~~-l~~~~-~~gg~~~~~~~---~~l~~-~~~IiV~TP~rl~~~l~~~~~~l~--~~~~lViDEah~l~~---------- 160 (465)
T Consensus 152 ~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs----~FL~k~~e~L~~~kFdfifVDDVDA~LkaskNvDriL~ 227 (1187)
T COG1110 152 AGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTS----QFLSKRFEELSKLKFDFIFVDDVDAILKASKNVDRLLR 227 (1187)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEH----HHHHHHHHHHCCCCCCEEEECCHHHHHHCCCCHHHHHH
T ss_conf 37852466531236657799999998659963999747----87886699840457778998047889863444888999
Q ss_pred -CCCHHH-H------HHHHHHH------------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -010035-7------8875431------------------------0222223334321122221111222221001344
Q gi|254780382|r 161 -MGFIPY-I------QNITSLV------------------------PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVN 208 (465)
Q Consensus 161 -~gf~~~-i------~~i~~~~------------------------~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~ 208 (465)
T Consensus 228 LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R--~~LfReLlgFevG 305 (1187)
T COG1110 228 LLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSR--LKLFRELLGFEVG 305 (1187)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCH--HHHHHHHHCCCCC
T ss_conf 80888788888899999999863223677899999988888877504773699960557877743--8899998398567
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECC---CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 4321234642111112222110244432101223456506776213---4432222222222332222234542033323
Q gi|254780382|r 209 TPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQ---KKNVVNLCHSLEKQGFSVCAIHGNIDQRSRM 285 (465)
Q Consensus 209 ~~~~~~~~i~~~~~~~~~~~~~k~~~l~~l~~~~~~~~k~iIF~~t---~~~~~~l~~~L~~~g~~v~~lhg~l~~~~R~ 285 (465)
T Consensus 306 ~~~~~LRNIvD~y~~~-~~~e~----~~elvk~l--G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~~-----~ 373 (1187)
T COG1110 306 SGGEGLRNIVDIYVES-ESLEK----VVELVKKL--GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAEK-----E 373 (1187)
T ss_pred CCCHHHHHEEEEECCC-CCHHH----HHHHHHHH--CCCEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECCC-----H
T ss_conf 6403130004420368-63788----99999984--89749999717738999999999986696079862320-----2
Q ss_pred HHHHHHCCCCCEEEEEH----HHHHHHHCCCC-CCEEEEECCC
Q ss_conf 44442013552388884----66464407887-6500200246
Q gi|254780382|r 286 KILSNFKEGTIQLMVAS----DLAARGLDIPD-VGHVFNFDVP 323 (465)
Q Consensus 286 ~~~~~F~~g~~~vLV~T----d~~~~GiDip~-v~~VI~~d~P 323 (465)
T Consensus 374 ~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 374 EALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred HHHHHHCCCCEEEEEEECCCCCCEEECCCCHHHEEEEEEECCC
T ss_conf 2456650676017998502134302247743454578995587