HHsearch alignment for GI: 254780382 and conserved domain: COG1111
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair].
Probab=100.00 E-value=1.2e-42 Score=294.03 Aligned_cols=332 Identities=23% Similarity=0.332 Sum_probs=222.3
Q ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 78989999999997699799982798517899999999998606521478279998285899999999987410233322
Q gi|254780382|r 23 KPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLT 102 (465)
Q Consensus 23 ~pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~~~~~~l~ 102 (465)
T Consensus 15 e~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~----~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~ 88 (542)
T COG1111 15 EPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF----GG-KVLFLAPTKPLVLQHAEFCRKVTGIPEDE 88 (542)
T ss_pred CHHHHHHHHHHHHHHC-CEEEEECCCCCHHHHHHHHHHHHHHHC----CC-EEEEECCCCHHHHHHHHHHHHHHCCCHHH
T ss_conf 5889999999998644-838995287507999999999998745----88-48996589517999999999985898433
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 10000122222222222101122102210233332000000121001025510000000100357887543102222233
Q gi|254780382|r 103 VALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLL 182 (465)
Q Consensus 103 ~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l~~~gf~~~i~~i~~~~~~~~q~i~ 182 (465)
T Consensus 89 i~~ltGev~p~~R~~~w-~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilg 167 (542)
T COG1111 89 IAALTGEVRPEEREELW-AKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILG 167 (542)
T ss_pred EEEECCCCCHHHHHHHH-HHCCEEEECCHHHHHHHHCCCCCHHHCEEEEECHHHHCCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 23111777868899987-51778995638777687617667678058986235541376069999999998256843798
Q ss_pred CCCCCCCCCCCC---CCC------------------CCCCC--CCCCCCCC-----------------------------
Q ss_conf 343211222211---112------------------22221--00134443-----------------------------
Q gi|254780382|r 183 FSATMTDELQKV---SEN------------------FLQNP--KRIEVNTP----------------------------- 210 (465)
Q Consensus 183 ~SAT~~~~v~~l---~~~------------------~l~~~--~~i~v~~~----------------------------- 210 (465)
T Consensus 168 LTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~ 247 (542)
T COG1111 168 LTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIES 247 (542)
T ss_pred EECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEC
T ss_conf 72389998799999998379542898457885177751404248996368589999999999999999999997695323
Q ss_pred CCC---------C-------CC-----------------------------CC---CCCCCCCCCC--------------
Q ss_conf 212---------3-------46-----------------------------42---1111122221--------------
Q gi|254780382|r 211 SST---------A-------ET-----------------------------IE---HCFVATYAQY-------------- 228 (465)
Q Consensus 211 ~~~---------~-------~~-----------------------------i~---~~~~~~~~~~-------------- 228 (465)
T Consensus 248 ~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d 327 (542)
T COG1111 248 SSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLAD 327 (542)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
T ss_conf 57310768999999899863576178889999999998888999999850869999999999987503520778987538
Q ss_pred -------------------CHHHHHHHHCCCC---CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC---------CCCC
Q ss_conf -------------------1024443210122---34565067762134432222222222332222---------2345
Q gi|254780382|r 229 -------------------SKKCALLQQLLQS---QDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVC---------AIHG 277 (465)
Q Consensus 229 -------------------~~k~~~l~~l~~~---~~~~~k~iIF~~t~~~~~~l~~~L~~~g~~v~---------~lhg 277 (465)
T Consensus 328 ~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~ 407 (542)
T COG1111 328 PYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDK 407 (542)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
T ss_conf 20479999999740036889618999999999972389855999961475899999999852875206886114545566
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEEECHH---HH
Q ss_conf 420333234444201355238888466464407887650020024677899887521024588853999977888---99
Q gi|254780382|r 278 NIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKE---DI 354 (465)
Q Consensus 278 ~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~GiDip~v~~VI~~d~P~~~~~y~hR~GR~gR~g~~G~~i~~~~~~---d~ 354 (465)
T Consensus 408 GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtrdea 486 (542)
T COG1111 408 GMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTRDEA 486 (542)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCC-CCCEEEEEEECCCHHHH
T ss_conf 65888999999998657851899812322467887656799956885788999860744557-79749999965862789
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780382|r 355 KHIDAIEK 362 (465)
Q Consensus 355 ~~~~~i~~ 362 (465)
T Consensus 487 yy~~s~rk 494 (542)
T COG1111 487 YYYSSRRK 494 (542)
T ss_pred HHHHHHHH
T ss_conf 99999999