HHsearch alignment for GI: 254780382 and conserved domain: COG1197
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].
Probab=100.00 E-value=1e-35 Score=249.26 Aligned_cols=332 Identities=19% Similarity=0.251 Sum_probs=242.2
Q ss_pred CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHC----C--CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEC
Q ss_conf 988899999997-8798789899999999976----9--97999827985178999999999986065214782799982
Q gi|254780382|r 7 GLSPKVVCAVLD-AGYVKPTPIQIKTIPLVLQ----R--HDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 (465)
Q Consensus 7 ~l~~~l~~~l~~-~~~~~pt~iQ~~~i~~~l~----g--~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~ 79 (465)
T Consensus 578 ~~d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV------~~GKQVAvLV 650 (1139)
T COG1197 578 PPDTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAV------MDGKQVAVLV 650 (1139)
T ss_pred CCCHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHCCCCCCHHEEECCCCCCHHHHHHHHHHHHH------CCCCEEEEEC
T ss_conf 99858999998549985-7878999999999886069866102565768759999999999986------3797499992
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC---CCCH-HHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCC
Q ss_conf 858999999999874102333221000012222222222---2101-122102210233332000000121001025510
Q gi|254780382|r 80 PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK---LERG-ADVLICTPGRILDHFNRGKLLMNNIEILVIDEA 155 (465)
Q Consensus 80 PtreLa~Qi~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~---l~~~-~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEa 155 (465)
T Consensus 651 PTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT-----HrLL~kdv~FkdLGLlIIDEE 725 (1139)
T COG1197 651 PTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT-----HRLLSKDVKFKDLGLLIIDEE 725 (1139)
T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEC-----HHHHCCCCEEECCCEEEEECH
T ss_conf 607868998999998733898258886055788999999999856984589963-----176478967704764897443
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 00000010035788754310222223334321122221111222221001344432123464211111222211024443
Q gi|254780382|r 156 DRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 (465)
Q Consensus 156 h~l~~~gf~~~i~~i~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~~~~~~~~~~~~~k~~~l 235 (465)
T Consensus 726 qR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~p--V-~T~V~~~d~----~~ir 793 (1139)
T COG1197 726 QR-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLP--V-KTFVSEYDD----LLIR 793 (1139)
T ss_pred HH-----CCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCHHHHHCCCCCCCCCC--E-EEEEECCCH----HHHH
T ss_conf 53-----2711789998775057289741788754477777443033111479987721--2-888715882----8999
Q ss_pred HHCCCCCCCCCEEEEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCC
Q ss_conf 21012234565067762134432222222222--3322222345420333234444201355238888466464407887
Q gi|254780382|r 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK--QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313 (465)
Q Consensus 236 ~~l~~~~~~~~k~iIF~~t~~~~~~l~~~L~~--~g~~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~GiDip~ 313 (465)
T Consensus 794 eAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPn 873 (1139)
T COG1197 794 EAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPN 873 (1139)
T ss_pred HHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCC
T ss_conf 99999871598799994333129999999998598468888525888899999999997288888988234304767778
Q ss_pred CCEEEEECCCC-CHHHHHHHHHCCCCCCCCEEEEEEECHHH------HHHHHHHHH
Q ss_conf 65002002467-78998875210245888539999778889------999999999
Q gi|254780382|r 314 VGHVFNFDVPN-RAENYIHRIGRTGRAGRHGKAFTLVAKED------IKHIDAIEK 362 (465)
Q Consensus 314 v~~VI~~d~P~-~~~~y~hR~GR~gR~g~~G~~i~~~~~~d------~~~~~~i~~ 362 (465)
T Consensus 874 ANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~ 929 (1139)
T COG1197 874 ANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIAS 929 (1139)
T ss_pred CCEEEEECCCCCCHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 75588965433457888875165477676289999626755458789999999972