HHsearch alignment for GI: 254780382 and conserved domain: COG1198

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair].
Probab=95.15  E-value=0.015  Score=35.39  Aligned_cols=87  Identities=14%  Similarity=0.261  Sum_probs=60.5

Q ss_pred             HHHH-HHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHH
Q ss_conf             2444-321012234565067762134432222222222-33222223454203332344442013552388884664644
Q gi|254780382|r  231 KCAL-LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK-QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG  308 (465)
Q Consensus       231 k~~~-l~~l~~~~~~~~k~iIF~~t~~~~~~l~~~L~~-~g~~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~G  308 (465)
T Consensus       230 KTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-F  308 (730)
T COG1198         230 KTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-F  308 (730)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECHHH-C
T ss_conf             899999999999975987999956534569999999998678745314657927899999998559715999712233-0


Q ss_pred             HCCCCCCEEE
Q ss_conf             0788765002
Q gi|254780382|r  309 LDIPDVGHVF  318 (465)
Q Consensus       309 iDip~v~~VI  318 (465)
T Consensus       309 ~Pf~~LGLII  318 (730)
T COG1198         309 LPFKNLGLII  318 (730)
T ss_pred             CCHHHCCEEE
T ss_conf             7231257699