HHsearch alignment for GI: 254780382 and conserved domain: COG1198
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair].
Probab=95.15 E-value=0.015 Score=35.39 Aligned_cols=87 Identities=14% Similarity=0.261 Sum_probs=60.5
Q ss_pred HHHH-HHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHH
Q ss_conf 2444-321012234565067762134432222222222-33222223454203332344442013552388884664644
Q gi|254780382|r 231 KCAL-LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK-QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308 (465)
Q Consensus 231 k~~~-l~~l~~~~~~~~k~iIF~~t~~~~~~l~~~L~~-~g~~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~G 308 (465)
T Consensus 230 KTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-F 308 (730)
T COG1198 230 KTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-F 308 (730)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECHHH-C
T ss_conf 899999999999975987999956534569999999998678745314657927899999998559715999712233-0
Q ss_pred HCCCCCCEEE
Q ss_conf 0788765002
Q gi|254780382|r 309 LDIPDVGHVF 318 (465)
Q Consensus 309 iDip~v~~VI 318 (465)
T Consensus 309 ~Pf~~LGLII 318 (730)
T COG1198 309 LPFKNLGLII 318 (730)
T ss_pred CCHHHCCEEE
T ss_conf 7231257699