HHsearch alignment for GI: 254780382 and conserved domain: COG1201

>COG1201 Lhr Lhr-like helicases [General function prediction only].
Probab=100.00  E-value=0  Score=380.40  Aligned_cols=360  Identities=23%  Similarity=0.364  Sum_probs=272.4

Q ss_pred             CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCC--CCCCCCCEEEEECCCHHHH
Q ss_conf             88899999997879878989999999997699799982798517899999999998606--5214782799982858999
Q gi|254780382|r    8 LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG--RARVRMPRTLILEPTRELA   85 (465)
Q Consensus         8 l~~~l~~~l~~~~~~~pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~--~~~~~~~~~lil~PtreLa   85 (465)
T Consensus         8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn   86 (814)
T COG1201           8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN   86 (814)
T ss_pred             CCHHHHHHHHHH-CCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHH
T ss_conf             489999999985-0899878999999985898469986899973799999999999860688888856999957078887


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCC--CCCCCEEECCCCCCCCCC--C
Q ss_conf             999999874102333221000012222222222210112210221023333200000--012100102551000000--0
Q gi|254780382|r   86 AQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKL--LMNNIEILVIDEADRMLD--M  161 (465)
Q Consensus        86 ~Qi~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~--~l~~~~~lViDEah~l~~--~  161 (465)
T Consensus        87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR  166 (814)
T COG1201          87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR  166 (814)
T ss_pred             HHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHCCCCCCCEEEECHHHHHHHHCCHHHHHHHCCCCEEEEEHHHHHHCCCC
T ss_conf             89999999999975984444228788677630469999689958348999836888999860780999512545434565


Q ss_pred             CC--HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCC-CCCCCCCCCCCCCCCCCCCCC-------CCC
Q ss_conf             10--03578875431022222333432112222111122222--1001-344432123464211111222-------211
Q gi|254780382|r  162 GF--IPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQN--PKRI-EVNTPSSTAETIEHCFVATYA-------QYS  229 (465)
Q Consensus       162 gf--~~~i~~i~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~--~~~i-~v~~~~~~~~~i~~~~~~~~~-------~~~  229 (465)
T Consensus       167 G~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~-~~k---~~~i~v~~p~~~~~~~~~~~~  240 (814)
T COG1201         167 GVQLALSLERLRELAG-DFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVS-AAK---KLEIKVISPVEDLIYDEELWA  240 (814)
T ss_pred             CHHHHHHHHHHHHHCC-CCEEEEEHHCCCCH-HHHHHHHCCCCCCEEEEECC-CCC---CCEEEEEECCCCCCCCCCHHH
T ss_conf             3134332999985175-53797540215888-99999854789842999745-677---531799804775000262467


Q ss_pred             HHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHH
Q ss_conf             0244432101223456506776213443222222222233-222223454203332344442013552388884664644
Q gi|254780382|r  230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQG-FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG  308 (465)
Q Consensus       230 ~k~~~l~~l~~~~~~~~k~iIF~~t~~~~~~l~~~L~~~g-~~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~G  308 (465)
T Consensus       241 ~~~~~i~~~v~---~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELG  317 (814)
T COG1201         241 ALYERIAELVK---KHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELG  317 (814)
T ss_pred             HHHHHHHHHHH---HCCCEEEEEECHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHC
T ss_conf             89999999996---168589997272789999999987268755653166657789999999866886299980642205


Q ss_pred             HCCCCCCEEEEECCCCCHHHHHHHHHCCCC-CCCCEEEEEEECH-HHHHHHHHH-HHHHCCCCCCCCCCHHH
Q ss_conf             078876500200246778998875210245-8885399997788-899999999-99962312304463665
Q gi|254780382|r  309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGR-AGRHGKAFTLVAK-EDIKHIDAI-EKLIEKKVDWLNGDLSS  377 (465)
Q Consensus       309 iDip~v~~VI~~d~P~~~~~y~hR~GR~gR-~g~~G~~i~~~~~-~d~~~~~~i-~~~~~~~~~~~~~~~~~  377 (465)
T Consensus       318 IDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~~~  389 (814)
T COG1201         318 IDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPKNP  389 (814)
T ss_pred             CCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             024774299981793888888685031466568864279981679999999999999971876667788763