HHsearch alignment for GI: 254780382 and conserved domain: COG1203
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms].
Probab=99.96 E-value=1.3e-28 Score=203.43 Aligned_cols=322 Identities=18% Similarity=0.219 Sum_probs=199.2
Q ss_pred CCHHHHHHHHHHHC---CC-CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCC
Q ss_conf 89899999999976---99-799982798517899999999998606521478279998285899999999987410233
Q gi|254780382|r 24 PTPIQIKTIPLVLQ---RH-DVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNY 99 (465)
Q Consensus 24 pt~iQ~~~i~~~l~---g~-dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~~~~~ 99 (465)
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~--~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK--IKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCC--CCCCCEEEEECCHHHHHHHHHHHHHHHHCCC
T ss_conf 13556799999873225575189991688871999999999975311--3545628996558999999999998751235
Q ss_pred CCCCCCCCCCC--C---CCCC----CCCCC-C----HHHHHHCCCCHHHHHHH-CCCCC-CC--CCEEECCCCCCCCCCC
Q ss_conf 32210000122--2---2222----22221-0----11221022102333320-00000-12--1001025510000000
Q gi|254780382|r 100 NLTVALLIGGI--P---FEAQ----NKKLE-R----GADVLICTPGRILDHFN-RGKLL-MN--NIEILVIDEADRMLDM 161 (465)
Q Consensus 100 ~l~~~~~~gg~--~---~~~~----~~~l~-~----~~~IiV~TP~rl~~~l~-~~~~~-l~--~~~~lViDEah~l~~~ 161 (465)
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred CCCCCCCCCCCHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEECHHHHHHHHHCCCCCHHHHHHHHCCEEEECHHHCCCC
T ss_conf 54331001310255651701002258881242236204522206999855740466725778876467787427541654
Q ss_pred CCHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 10035788754310-2222233343211222211112222210013444321---2346421111122221102444321
Q gi|254780382|r 162 GFIPYIQNITSLVP-FTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSS---TAETIEHCFVATYAQYSKKCALLQQ 237 (465)
Q Consensus 162 gf~~~i~~i~~~~~-~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~---~~~~i~~~~~~~~~~~~~k~~~l~~ 237 (465)
T Consensus 354 ~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~~ 432 (733)
T COG1203 354 TMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKER-VDVEDGPQEELIEL 432 (733)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCEECC-HHHHCCCHHHHHHH
T ss_conf 30899999999999689978999278997999999998503761213443233455433000001-11320303776655
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH----CCCCCEEEEEHHHHHHHHCCCC
Q ss_conf 012234565067762134432222222222332222234542033323444420----1355238888466464407887
Q gi|254780382|r 238 LLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNF----KEGTIQLMVASDLAARGLDIPD 313 (465)
Q Consensus 238 l~~~~~~~~k~iIF~~t~~~~~~l~~~L~~~g~~v~~lhg~l~~~~R~~~~~~F----~~g~~~vLV~Td~~~~GiDip~ 313 (465)
T Consensus 433 ~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid- 511 (733)
T COG1203 433 ISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID- 511 (733)
T ss_pred HHHHHCCCCCEEEEEECHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEECCC-
T ss_conf 6776425882899992789999999998555895799886355766999999998887537862999834599886266-
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCC--CCEEEEEEECH
Q ss_conf 650020024677899887521024588--85399997788
Q gi|254780382|r 314 VGHVFNFDVPNRAENYIHRIGRTGRAG--RHGKAFTLVAK 351 (465)
Q Consensus 314 v~~VI~~d~P~~~~~y~hR~GR~gR~g--~~G~~i~~~~~ 351 (465)
T Consensus 512 fd~mI--Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~ 549 (733)
T COG1203 512 FDVLI--TELAPIDSLIQRAGRVNRHGKKENGKIYVYNDE 549 (733)
T ss_pred CCEEE--ECCCCHHHHHHHHHHHHHCCCCCCCCEEEEECC
T ss_conf 68466--347875679998777741566668716998346