HHsearch alignment for GI: 254780382 and conserved domain: COG1204
>COG1204 Superfamily II helicase [General function prediction only].
Probab=100.00 E-value=8.4e-45 Score=307.77 Aligned_cols=337 Identities=19% Similarity=0.292 Sum_probs=240.6
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHH
Q ss_conf 888999999978798789899999999-9769979998279851789999999999860652147827999828589999
Q gi|254780382|r 8 LSPKVVCAVLDAGYVKPTPIQIKTIPL-VLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAA 86 (465)
Q Consensus 8 l~~~l~~~l~~~~~~~pt~iQ~~~i~~-~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~ 86 (465)
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-----~~k~vYivPlkALa~ 90 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-----GGKVVYIVPLKALAE 90 (766)
T ss_pred CCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC-----CCCEEEEECHHHHHH
T ss_conf 207899886048847755789987411125798679976788866999999999999855-----983899907599999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCHHH
Q ss_conf 99999874102333221000012222222222210112210221023333200000012100102551000000010035
Q gi|254780382|r 87 QVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY 166 (465)
Q Consensus 87 Qi~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l~~~gf~~~ 166 (465)
T Consensus 91 Ek~~~~~~~-~~~GirV~~~TgD~~~~~~--~-l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~ 166 (766)
T COG1204 91 EKYEEFSRL-EELGIRVGISTGDYDLDDE--R-LARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPV 166 (766)
T ss_pred HHHHHHHHH-HHCCCEEEEECCCCCCCHH--H-HCCCCEEEECHHHHHHHHHCCCCHHHCCCEEEEEEEEECCCCCCCCE
T ss_conf 999986668-8659779996488655533--4-14588799746786676506753334016899942101487565864
Q ss_pred HHHHHHHHC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCC-----CCHHHHHHH
Q ss_conf 788754310---22222333432112222111122222100134--44321234642111112222-----110244432
Q gi|254780382|r 167 IQNITSLVP---FTRQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQ-----YSKKCALLQ 236 (465)
Q Consensus 167 i~~i~~~~~---~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v--~~~~~~~~~i~~~~~~~~~~-----~~~k~~~l~ 236 (465)
T Consensus 167 lE~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~-~~~~~~~~~~~~k~~~~~~~~~~~~ 244 (766)
T COG1204 167 LESIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPLRRGVP-YVGAFLGADGKKKTWPLLIDNLALE 244 (766)
T ss_pred EHHHHHHHHHHCCCEEEEEEEEECCCH-HHHHHHHCCCCCCCCCCCCCCCCCCC-CCEEEEEECCCCCCCCCCCHHHHHH
T ss_conf 022798888527551798873116888-99999858835556778862015776-5317987147643454210579999
Q ss_pred HCCCCCCCCCEEEEEECCCCCCCCCCCCCCC---------------------CC----------------CCCCCCCCCC
Q ss_conf 1012234565067762134432222222222---------------------33----------------2222234542
Q gi|254780382|r 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK---------------------QG----------------FSVCAIHGNI 279 (465)
Q Consensus 237 ~l~~~~~~~~k~iIF~~t~~~~~~l~~~L~~---------------------~g----------------~~v~~lhg~l 279 (465)
T Consensus 245 ~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL 324 (766)
T COG1204 245 LVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGL 324 (766)
T ss_pred HHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 99999856986999974572599999999998751277165430122344211235543221789999972754112689
Q ss_pred CHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCEEE----EEC-----CCCCHHHHHHHHHCCCCCC--CCEEEEEE
Q ss_conf 033323444420135523888846646440788765002----002-----4677899887521024588--85399997
Q gi|254780382|r 280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF----NFD-----VPNRAENYIHRIGRTGRAG--RHGKAFTL 348 (465)
Q Consensus 280 ~~~~R~~~~~~F~~g~~~vLV~Td~~~~GiDip~v~~VI----~~d-----~P~~~~~y~hR~GR~gR~g--~~G~~i~~ 348 (465)
T Consensus 325 ~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~ 404 (766)
T COG1204 325 PREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIIL 404 (766)
T ss_pred CHHHHHHHHHHHHCCCCEEEEECHHHHHHCCCCCEEEEEEEEEEECCCCCEEECCHHHHHHCCCCCCCCCCCCCCCEEEE
T ss_conf 78899999999866985499954577621688632899910387757788477764148655676799875777827999
Q ss_pred E-CHHHHH
Q ss_conf 7-888999
Q gi|254780382|r 349 V-AKEDIK 355 (465)
Q Consensus 349 ~-~~~d~~ 355 (465)
T Consensus 405 ~~~~~~~~ 412 (766)
T COG1204 405 ATSHDELE 412 (766)
T ss_pred ECCCCCHH
T ss_conf 35863155