HHsearch alignment for GI: 254780382 and conserved domain: COG1204

>COG1204 Superfamily II helicase [General function prediction only].
Probab=100.00  E-value=8.4e-45  Score=307.77  Aligned_cols=337  Identities=19%  Similarity=0.292  Sum_probs=240.6

Q ss_pred             CCHHHHHHHHHCCCCCCCHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHH
Q ss_conf             888999999978798789899999999-9769979998279851789999999999860652147827999828589999
Q gi|254780382|r    8 LSPKVVCAVLDAGYVKPTPIQIKTIPL-VLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAA   86 (465)
Q Consensus         8 l~~~l~~~l~~~~~~~pt~iQ~~~i~~-~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~   86 (465)
T Consensus        16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-----~~k~vYivPlkALa~   90 (766)
T COG1204          16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-----GGKVVYIVPLKALAE   90 (766)
T ss_pred             CCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC-----CCCEEEEECHHHHHH
T ss_conf             207899886048847755789987411125798679976788866999999999999855-----983899907599999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCHHH
Q ss_conf             99999874102333221000012222222222210112210221023333200000012100102551000000010035
Q gi|254780382|r   87 QVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPY  166 (465)
Q Consensus        87 Qi~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l~~~gf~~~  166 (465)
T Consensus        91 Ek~~~~~~~-~~~GirV~~~TgD~~~~~~--~-l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~  166 (766)
T COG1204          91 EKYEEFSRL-EELGIRVGISTGDYDLDDE--R-LARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPV  166 (766)
T ss_pred             HHHHHHHHH-HHCCCEEEEECCCCCCCHH--H-HCCCCEEEECHHHHHHHHHCCCCHHHCCCEEEEEEEEECCCCCCCCE
T ss_conf             999986668-8659779996488655533--4-14588799746786676506753334016899942101487565864


Q ss_pred             HHHHHHHHC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCC-----CCHHHHHHH
Q ss_conf             788754310---22222333432112222111122222100134--44321234642111112222-----110244432
Q gi|254780382|r  167 IQNITSLVP---FTRQTLLFSATMTDELQKVSENFLQNPKRIEV--NTPSSTAETIEHCFVATYAQ-----YSKKCALLQ  236 (465)
Q Consensus       167 i~~i~~~~~---~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v--~~~~~~~~~i~~~~~~~~~~-----~~~k~~~l~  236 (465)
T Consensus       167 lE~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~-~~~~~~~~~~~~k~~~~~~~~~~~~  244 (766)
T COG1204         167 LESIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPLRRGVP-YVGAFLGADGKKKTWPLLIDNLALE  244 (766)
T ss_pred             EHHHHHHHHHHCCCEEEEEEEEECCCH-HHHHHHHCCCCCCCCCCCCCCCCCCC-CCEEEEEECCCCCCCCCCCHHHHHH
T ss_conf             022798888527551798873116888-99999858835556778862015776-5317987147643454210579999


Q ss_pred             HCCCCCCCCCEEEEEECCCCCCCCCCCCCCC---------------------CC----------------CCCCCCCCCC
Q ss_conf             1012234565067762134432222222222---------------------33----------------2222234542
Q gi|254780382|r  237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEK---------------------QG----------------FSVCAIHGNI  279 (465)
Q Consensus       237 ~l~~~~~~~~k~iIF~~t~~~~~~l~~~L~~---------------------~g----------------~~v~~lhg~l  279 (465)
T Consensus       245 ~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL  324 (766)
T COG1204         245 LVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGL  324 (766)
T ss_pred             HHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf             99999856986999974572599999999998751277165430122344211235543221789999972754112689


Q ss_pred             CHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCEEE----EEC-----CCCCHHHHHHHHHCCCCCC--CCEEEEEE
Q ss_conf             033323444420135523888846646440788765002----002-----4677899887521024588--85399997
Q gi|254780382|r  280 DQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF----NFD-----VPNRAENYIHRIGRTGRAG--RHGKAFTL  348 (465)
Q Consensus       280 ~~~~R~~~~~~F~~g~~~vLV~Td~~~~GiDip~v~~VI----~~d-----~P~~~~~y~hR~GR~gR~g--~~G~~i~~  348 (465)
T Consensus       325 ~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~  404 (766)
T COG1204         325 PREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIIL  404 (766)
T ss_pred             CHHHHHHHHHHHHCCCCEEEEECHHHHHHCCCCCEEEEEEEEEEECCCCCEEECCHHHHHHCCCCCCCCCCCCCCCEEEE
T ss_conf             78899999999866985499954577621688632899910387757788477764148655676799875777827999


Q ss_pred             E-CHHHHH
Q ss_conf             7-888999
Q gi|254780382|r  349 V-AKEDIK  355 (465)
Q Consensus       349 ~-~~~d~~  355 (465)
T Consensus       405 ~~~~~~~~  412 (766)
T COG1204         405 ATSHDELE  412 (766)
T ss_pred             ECCCCCHH
T ss_conf             35863155