HHsearch alignment for GI: 254780382 and conserved domain: COG1643
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair].
Probab=99.95 E-value=6e-27 Score=192.72 Aligned_cols=304 Identities=20% Similarity=0.310 Sum_probs=194.7
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHH-HHHCCCCCCCCCCCCCCCC
Q ss_conf 999769979998279851789999999999860652147827999828589999999998-7410233322100001222
Q gi|254780382|r 33 PLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNF-EKYGKNYNLTVALLIGGIP 111 (465)
Q Consensus 33 ~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~-~~~~~~~~l~~~~~~gg~~ 111 (465)
T Consensus 60 ~ai~~~~vvii~getGsGKTT--qlP~~--lle~g~-~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~ 134 (845)
T COG1643 60 KAIEQNQVVIIVGETGSGKTT--QLPQF--LLEEGL-GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFES 134 (845)
T ss_pred HHHHHCCEEEEECCCCCCHHH--HHHHH--HHHHHC-CCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEC
T ss_conf 999869789986799887587--88999--996001-6687599658438999999999999838986765437999622
Q ss_pred CCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCC-CCCCCCH-HHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 2222222210112210221023333200000012100102551000-0000100-3578875431022222333432112
Q gi|254780382|r 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR-MLDMGFI-PYIQNITSLVPFTRQTLLFSATMTD 189 (465)
Q Consensus 112 ~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~-l~~~gf~-~~i~~i~~~~~~~~q~i~~SAT~~~ 189 (465)
T Consensus 135 ~~------s~~Trik~mTdGiLlrei~~D~-~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~ 207 (845)
T COG1643 135 KV------SPRTRIKVMTDGILLREIQNDP-LLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDA 207 (845)
T ss_pred CC------CCCCEEEEECCHHHHHHHHHCC-CCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCH
T ss_conf 67------8771468951479999984380-2045877997013355688899999999998646887059997253588
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC--CCCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 222111122222100134443212346421111122221102444321012--234565067762134432222222222
Q gi|254780382|r 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEK 267 (465)
Q Consensus 190 ~v~~l~~~~l~~~~~i~v~~~~~~~~~i~~~~~~~~~~~~~k~~~l~~l~~--~~~~~~k~iIF~~t~~~~~~l~~~L~~ 267 (465)
T Consensus 208 --~rfs~-~f~~apvi~i~GR~f---PVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~ 281 (845)
T COG1643 208 --ERFSA-YFGNAPVIEIEGRTY---PVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEK 281 (845)
T ss_pred --HHHHH-HCCCCCEEEECCCCC---CEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHH
T ss_conf --99997-628998787558866---447886577775136999999999996368999889977868999999999973
Q ss_pred ----CCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCEEEE--------EC----------CCCC
Q ss_conf ----3322222345420333234444201355238888466464407887650020--------02----------4677
Q gi|254780382|r 268 ----QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN--------FD----------VPNR 325 (465)
Q Consensus 268 ----~g~~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~GiDip~v~~VI~--------~d----------~P~~ 325 (465)
T Consensus 282 ~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~IS 361 (845)
T COG1643 282 AELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPIS 361 (845)
T ss_pred CCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCEEEEECCEEECCEEECCEEEEEECCCCCCCCCCCCCCCEEEEEEEEC
T ss_conf 24478838940403599899986628788886049997514001311578589984882521003513485266678750
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEEECHHHHH
Q ss_conf 899887521024588853999977888999
Q gi|254780382|r 326 AENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 (465)
Q Consensus 326 ~~~y~hR~GR~gR~g~~G~~i~~~~~~d~~ 355 (465)
T Consensus 362 qAsA~QRaGRAGR~-~pGicyRLyse~~~~ 390 (845)
T COG1643 362 KASADQRAGRAGRT-GPGICYRLYSEEDFL 390 (845)
T ss_pred HHHHHHHCCCCCCC-CCCEEEEECCHHHHH
T ss_conf 53233434554577-785289944799987