HHsearch alignment for GI: 254780382 and conserved domain: COG4096
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].
Probab=99.91 E-value=2.8e-23 Score=169.11 Aligned_cols=297 Identities=21% Similarity=0.313 Sum_probs=182.2
Q ss_pred CCCCHHHHHHHHHHH----CCCC-EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHC
Q ss_conf 878989999999997----6997-99982798517899999999998606521478279998285899999999987410
Q gi|254780382|r 22 VKPTPIQIKTIPLVL----QRHD-VCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYG 96 (465)
Q Consensus 22 ~~pt~iQ~~~i~~~l----~g~d-vi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~~ 96 (465)
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrT-Aiaii~rL~r~~---~~KRVLFLaDR~~Lv~QA~~af~~~~ 239 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRT-AIAIIDRLIKSG---WVKRVLFLADRNALVDQAYGAFEDFL 239 (875)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEE-HHHHHHHHHHCC---HHHEEEEEECHHHHHHHHHHHHHHHC
T ss_conf 36227889999999999866874489997058885231-999999999614---14305676126789999999999639
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCC-----CCCCCCCEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 23332210000122222222222101122102210233332000-----0001210010255100000001003578875
Q gi|254780382|r 97 KNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRG-----KLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 (465)
Q Consensus 97 ~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~-----~~~l~~~~~lViDEah~l~~~gf~~~i~~i~ 171 (465)
T Consensus 240 P~~~~-~n~i~~--------~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR----gi~~~~~~I~ 306 (875)
T COG4096 240 PFGTK-MNKIED--------KKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR----GIYSEWSSIL 306 (875)
T ss_pred CCCCC-EEEECC--------CCCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCEEEEEECHHHH----HHHHHHHHHH
T ss_conf 88640-123201--------4678630588760377875640654565567888312899606666----6787667898
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC------------------CCCC----CCC-----------CCCCC
Q ss_conf 4310222223334321122221111222-221001------------------3444----321-----------23464
Q gi|254780382|r 172 SLVPFTRQTLLFSATMTDELQKVSENFL-QNPKRI------------------EVNT----PSS-----------TAETI 217 (465)
Q Consensus 172 ~~~~~~~q~i~~SAT~~~~v~~l~~~~l-~~~~~i------------------~v~~----~~~-----------~~~~i 217 (465)
T Consensus 307 dYFdA~~~--gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DG~Lvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i 384 (875)
T COG4096 307 DYFDAATQ--GLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAI 384 (875)
T ss_pred HHHHHHHH--HHCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCC
T ss_conf 89999887--6125762111323101337970224128888521545788633766431566747675523233313436
Q ss_pred --C-CCC--------CCCCCCCCHHHHHHHHCCCC---CCCCCEEEEEECCCCCCCCCCCCCCCC-----CCCCCCCCCC
Q ss_conf --2-111--------11222211024443210122---345650677621344322222222223-----3222223454
Q gi|254780382|r 218 --E-HCF--------VATYAQYSKKCALLQQLLQS---QDTMKNGIIFCNQKKNVVNLCHSLEKQ-----GFSVCAIHGN 278 (465)
Q Consensus 218 --~-~~~--------~~~~~~~~~k~~~l~~l~~~---~~~~~k~iIF~~t~~~~~~l~~~L~~~-----g~~v~~lhg~ 278 (465)
T Consensus 385 ~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~e~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d 464 (875)
T COG4096 385 DEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGD 464 (875)
T ss_pred CCCCCCCCCCCCCHHEECCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEECC
T ss_conf 86544633355320000312478999999998425668886684589962707899999999874801067459998444
Q ss_pred CCHHHHHHHHHHHCC--CCCEEEEEHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 203332344442013--5523888846646440788765002002467789988752102458
Q gi|254780382|r 279 IDQRSRMKILSNFKE--GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339 (465)
Q Consensus 279 l~~~~R~~~~~~F~~--g~~~vLV~Td~~~~GiDip~v~~VI~~d~P~~~~~y~hR~GR~gR~ 339 (465)
T Consensus 465 ~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~V~SktkF~QMvGRGTRl 525 (875)
T COG4096 465 AEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred CHHH--HHHHHHHHHCCCCCCEEEEHHHHHCCCCCHHEEEEEEHHHHHHHHHHHHHHCCCCCC
T ss_conf 0656--899998874378983587612454278762204564314446689999986676543