HHsearch alignment for GI: 254780382 and conserved domain: COG4098
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair].
Probab=99.92 E-value=4.2e-24 Score=174.41 Aligned_cols=298 Identities=20% Similarity=0.264 Sum_probs=187.1
Q ss_pred CCCCHHHHHHHHHHH----CCCCEEEECCCCCCHHHH-HHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHC
Q ss_conf 878989999999997----699799982798517899-999999998606521478279998285899999999987410
Q gi|254780382|r 22 VKPTPIQIKTIPLVL----QRHDVCGIAQTGTGKTAS-FVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYG 96 (465)
Q Consensus 22 ~~pt~iQ~~~i~~~l----~g~dvi~~apTGsGKT~~-~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~~ 96 (465)
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~--~i~~a-----l~~G~~vciASPRvDVclEl~~Rlk~aF 168 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQ--GIEQA-----LNQGGRVCIASPRVDVCLELYPRLKQAF 168 (441)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH--HHHHH-----HHCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 5327247899999999987157689997427985101699--99999-----9659869984686101177789999762
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCHH--HHH-HHHHH
Q ss_conf 233322100001222222222221011221022102333320000001210010255100000001003--578-87543
Q gi|254780382|r 97 KNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP--YIQ-NITSL 173 (465)
Q Consensus 97 ~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l~~~gf~~--~i~-~i~~~ 173 (465)
T Consensus 169 --~~~~I~~Lyg~S~~~f-----r--~plvVaTtHQLlrFk-------~aFD~liIDEVDA-F--P~~~d~~L~~Av~~a 229 (441)
T COG4098 169 --SNCDIDLLYGDSDSYF-----R--APLVVATTHQLLRFK-------QAFDLLIIDEVDA-F--PFSDDQSLQYAVKKA 229 (441)
T ss_pred --CCCCEEEEECCCCHHC-----C--CCEEEEEHHHHHHHH-------HHCCEEEEECCCC-C--CCCCCHHHHHHHHHH
T ss_conf --1498666725871313-----3--447997668888888-------6433899830245-6--566788899999975
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH-------HHHHHCCCCCCCCC
Q ss_conf 10222223334321122221111222221001344432123464211111222211024-------44321012234565
Q gi|254780382|r 174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC-------ALLQQLLQSQDTMK 246 (465)
Q Consensus 174 ~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~~~~~~~~~~~~~k~-------~~l~~l~~~~~~~~ 246 (465)
T Consensus 230 rk~~g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~-~~~k~l~r~kl~~kl~~~lekq~~~~~ 306 (441)
T COG4098 230 RKKEGATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIG-NWNKKLQRNKLPLKLKRWLEKQRKTGR 306 (441)
T ss_pred HCCCCCEEEEECCCHHHHHHHHHHC--CEEEEECCHHHCCCCCCCCCEEEEC-CHHHHHHHCCCCHHHHHHHHHHHHCCC
T ss_conf 1236736999648807888875407--7567634465438998987428864-477776644477899999999874388
Q ss_pred EEEEEECCCCCCCCCCCCCC-CCCC-CCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCEEE-EECCC
Q ss_conf 06776213443222222222-2332-222234542033323444420135523888846646440788765002-00246
Q gi|254780382|r 247 NGIIFCNQKKNVVNLCHSLE-KQGF-SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF-NFDVP 323 (465)
Q Consensus 247 k~iIF~~t~~~~~~l~~~L~-~~g~-~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~GiDip~v~~VI-~~d~P 323 (465)
T Consensus 307 P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~ 384 (441)
T COG4098 307 PVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHR 384 (441)
T ss_pred CEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECC--CCCHHHHHHHHHCCCEEEEEEEEHHHCCCCCCCCEEEEECCCCC
T ss_conf 2899925058899999999861886421565336--70178999998758638999844033266435623999547764
Q ss_pred -CCHHHHHHHHHCCCCCCC--CEEEEEEEC
Q ss_conf -778998875210245888--539999778
Q gi|254780382|r 324 -NRAENYIHRIGRTGRAGR--HGKAFTLVA 350 (465)
Q Consensus 324 -~~~~~y~hR~GR~gR~g~--~G~~i~~~~ 350 (465)
T Consensus 385 vfTesaLVQIaGRvGRs~~~PtGdv~FFH~ 414 (441)
T COG4098 385 VFTESALVQIAGRVGRSLERPTGDVLFFHY 414 (441)
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCCEEEEEC
T ss_conf 201889999752316787689875899964