HHsearch alignment for GI: 254780382 and conserved domain: COG4098

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair].
Probab=99.92  E-value=4.2e-24  Score=174.41  Aligned_cols=298  Identities=20%  Similarity=0.264  Sum_probs=187.1

Q ss_pred             CCCCHHHHHHHHHHH----CCCCEEEECCCCCCHHHH-HHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHC
Q ss_conf             878989999999997----699799982798517899-999999998606521478279998285899999999987410
Q gi|254780382|r   22 VKPTPIQIKTIPLVL----QRHDVCGIAQTGTGKTAS-FVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYG   96 (465)
Q Consensus        22 ~~pt~iQ~~~i~~~l----~g~dvi~~apTGsGKT~~-~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~~   96 (465)
T Consensus        96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~--~i~~a-----l~~G~~vciASPRvDVclEl~~Rlk~aF  168 (441)
T COG4098          96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQ--GIEQA-----LNQGGRVCIASPRVDVCLELYPRLKQAF  168 (441)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH--HHHHH-----HHCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             5327247899999999987157689997427985101699--99999-----9659869984686101177789999762


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCHH--HHH-HHHHH
Q ss_conf             233322100001222222222221011221022102333320000001210010255100000001003--578-87543
Q gi|254780382|r   97 KNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIP--YIQ-NITSL  173 (465)
Q Consensus        97 ~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l~~~gf~~--~i~-~i~~~  173 (465)
T Consensus       169 --~~~~I~~Lyg~S~~~f-----r--~plvVaTtHQLlrFk-------~aFD~liIDEVDA-F--P~~~d~~L~~Av~~a  229 (441)
T COG4098         169 --SNCDIDLLYGDSDSYF-----R--APLVVATTHQLLRFK-------QAFDLLIIDEVDA-F--PFSDDQSLQYAVKKA  229 (441)
T ss_pred             --CCCCEEEEECCCCHHC-----C--CCEEEEEHHHHHHHH-------HHCCEEEEECCCC-C--CCCCCHHHHHHHHHH
T ss_conf             --1498666725871313-----3--447997668888888-------6433899830245-6--566788899999975


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH-------HHHHHCCCCCCCCC
Q ss_conf             10222223334321122221111222221001344432123464211111222211024-------44321012234565
Q gi|254780382|r  174 VPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKC-------ALLQQLLQSQDTMK  246 (465)
Q Consensus       174 ~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~~~~~~~~~~~~~k~-------~~l~~l~~~~~~~~  246 (465)
T Consensus       230 rk~~g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~-~~~k~l~r~kl~~kl~~~lekq~~~~~  306 (441)
T COG4098         230 RKKEGATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIG-NWNKKLQRNKLPLKLKRWLEKQRKTGR  306 (441)
T ss_pred             HCCCCCEEEEECCCHHHHHHHHHHC--CEEEEECCHHHCCCCCCCCCEEEEC-CHHHHHHHCCCCHHHHHHHHHHHHCCC
T ss_conf             1236736999648807888875407--7567634465438998987428864-477776644477899999999874388


Q ss_pred             EEEEEECCCCCCCCCCCCCC-CCCC-CCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCEEE-EECCC
Q ss_conf             06776213443222222222-2332-222234542033323444420135523888846646440788765002-00246
Q gi|254780382|r  247 NGIIFCNQKKNVVNLCHSLE-KQGF-SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF-NFDVP  323 (465)
Q Consensus       247 k~iIF~~t~~~~~~l~~~L~-~~g~-~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~GiDip~v~~VI-~~d~P  323 (465)
T Consensus       307 P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~  384 (441)
T COG4098         307 PVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHR  384 (441)
T ss_pred             CEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECC--CCCHHHHHHHHHCCCEEEEEEEEHHHCCCCCCCCEEEEECCCCC
T ss_conf             2899925058899999999861886421565336--70178999998758638999844033266435623999547764


Q ss_pred             -CCHHHHHHHHHCCCCCCC--CEEEEEEEC
Q ss_conf             -778998875210245888--539999778
Q gi|254780382|r  324 -NRAENYIHRIGRTGRAGR--HGKAFTLVA  350 (465)
Q Consensus       324 -~~~~~y~hR~GR~gR~g~--~G~~i~~~~  350 (465)
T Consensus       385 vfTesaLVQIaGRvGRs~~~PtGdv~FFH~  414 (441)
T COG4098         385 VFTESALVQIAGRVGRSLERPTGDVLFFHY  414 (441)
T ss_pred             CCCHHHHHHHHHHCCCCCCCCCCCEEEEEC
T ss_conf             201889999752316787689875899964