HHsearch alignment for GI: 254780382 and conserved domain: COG4581
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair].
Probab=100.00 E-value=5.7e-33 Score=231.59 Aligned_cols=317 Identities=20% Similarity=0.292 Sum_probs=216.8
Q ss_pred HHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHH-H
Q ss_conf 997879878989999999997699799982798517899999999998606521478279998285899999999987-4
Q gi|254780382|r 16 VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFE-K 94 (465)
Q Consensus 16 l~~~~~~~pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~-~ 94 (465)
T Consensus 113 ~~~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~------~~qrviYTsPIKALsNQKyrdl~~~ 185 (1041)
T COG4581 113 AREYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR------DGQRVIYTSPIKALSNQKYRDLLAK 185 (1041)
T ss_pred HHHCCCC-CCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHH------CCCCEEECCCHHHHHHHHHHHHHHH
T ss_conf 8748989-67899999999847995799733789855599999999987------1894486163066420679999998
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 10233322100001222222222221011221022102333320000001210010255100000001003578875431
Q gi|254780382|r 95 YGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV 174 (465)
Q Consensus 95 ~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l~~~gf~~~i~~i~~~~ 174 (465)
T Consensus 186 fgdv-~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~l 257 (1041)
T COG4581 186 FGDV-ADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILL 257 (1041)
T ss_pred HHHH-HHHCCCEECCEEEC-------CCCCEEEEEHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHC
T ss_conf 6005-65404010543427-------999668860999999862586101353068887666504632212578999866
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCC------CCCC-----------------
Q ss_conf 022222333432112222111122---22210013444321234642111112------2221-----------------
Q gi|254780382|r 175 PFTRQTLLFSATMTDELQKVSENF---LQNPKRIEVNTPSSTAETIEHCFVAT------YAQY----------------- 228 (465)
Q Consensus 175 ~~~~q~i~~SAT~~~~v~~l~~~~---l~~~~~i~v~~~~~~~~~i~~~~~~~------~~~~----------------- 228 (465)
T Consensus 258 P~~v~~v~LSATv~N~-~EF~~Wi~~~~~~~~~vv~-t~~RpvP-L~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~ 334 (1041)
T COG4581 258 PDHVRFVFLSATVPNA-EEFAEWIQRVHSQPIHVVS-TEHRPVP-LEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSC 334 (1041)
T ss_pred CCCCCEEEEECCCCCH-HHHHHHHHHCCCCCEEEEE-ECCCCCC-EEEEEECCCCEEEEECCCCCCHHHCCHHHHHHHHC
T ss_conf 7777689996788987-9999999740378748995-0688897-17988658751453545653011134334334302
Q ss_pred --------C----------------------HHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC----------
Q ss_conf --------1----------------------024443210122345650677621344322222222223----------
Q gi|254780382|r 229 --------S----------------------KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ---------- 268 (465)
Q Consensus 229 --------~----------------------~k~~~l~~l~~~~~~~~k~iIF~~t~~~~~~l~~~L~~~---------- 268 (465)
T Consensus 335 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~--~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~ 412 (1041)
T COG4581 335 FSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK--DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKER 412 (1041)
T ss_pred CCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH--HCCCCEEEEEECHHHHHHHHHHHCCCCCCCCCCHHH
T ss_conf 200013567654321233334567766565530577766544--037852899973651899998750364215882788
Q ss_pred ------------------CC-------------CCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCEE
Q ss_conf ------------------32-------------22223454203332344442013552388884664644078876500
Q gi|254780382|r 269 ------------------GF-------------SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV 317 (465)
Q Consensus 269 ------------------g~-------------~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~GiDip~v~~V 317 (465)
T Consensus 413 ~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv 492 (1041)
T COG4581 413 AIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVV 492 (1041)
T ss_pred HHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEEHHHHHHHCCCCCCCEE
T ss_conf 89999999985347202127500999999876034540245036899999999860430577533346401578400135
Q ss_pred E----EEC----CCCCHHHHHHHHHCCCCCCC--CEEEEEEECHH
Q ss_conf 2----002----46778998875210245888--53999977888
Q gi|254780382|r 318 F----NFD----VPNRAENYIHRIGRTGRAGR--HGKAFTLVAKE 352 (465)
Q Consensus 318 I----~~d----~P~~~~~y~hR~GR~gR~g~--~G~~i~~~~~~ 352 (465)
T Consensus 493 ~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 493 FTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred EEEEEEECCCCEEECCHHHHHHHHHHHCCCCCCCCCEEEEECCCC
T ss_conf 465577548853565815777754443015565465499955788