HHsearch alignment for GI: 254780382 and conserved domain: COG4889
>COG4889 Predicted helicase [General function prediction only].
Probab=99.80 E-value=7.3e-20 Score=147.01 Aligned_cols=338 Identities=17% Similarity=0.241 Sum_probs=191.4
Q ss_pred CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC----EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf 9843669888999999978798789899999999976997----999827985178999999999986065214782799
Q gi|254780382|r 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHD----VCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTL 76 (465)
Q Consensus 1 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~l~g~d----vi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~l 76 (465)
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTs-LkisEala~-------~~iL 210 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTS-LKISEALAA-------ARIL 210 (1518)
T ss_pred CCHHHCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHH-HHHHHHHHH-------HHEE
T ss_conf 77543495-32665656478789983678999999862551667758983378862137-889999864-------0236
Q ss_pred EECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-------------------------CCHHHHHHCCCC
Q ss_conf 9828589999999998741023332210000122222222222-------------------------101122102210
Q gi|254780382|r 77 ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL-------------------------ERGADVLICTPG 131 (465)
Q Consensus 77 il~PtreLa~Qi~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l-------------------------~~~~~IiV~TP~ 131 (465)
T Consensus 211 ~LvPSIsLLsQTlrew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQ 289 (1518)
T COG4889 211 FLVPSISLLSQTLREWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQ 289 (1518)
T ss_pred EECCHHHHHHHHHHHHHHC-CCCCCEEEEEECCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 5435189999999988534-665512578863652344412321204788875749999999987533378389997021
Q ss_pred HHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHC-----CCCCCCCCCCCC---CCCCCC----------
Q ss_conf 23333200000012100102551000000010035788754310-----222223334321---122221----------
Q gi|254780382|r 132 RILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVP-----FTRQTLLFSATM---TDELQK---------- 193 (465)
Q Consensus 132 rl~~~l~~~~~~l~~~~~lViDEah~l~~~gf~~~i~~i~~~~~-----~~~q~i~~SAT~---~~~v~~---------- 193 (465)
T Consensus 290 Sl~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~ 369 (1518)
T COG4889 290 SLPRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELS 369 (1518)
T ss_pred CHHHHHHHHHCCCCCCCEEEECCHHCCCCCEECCCCCCCCEEECCCCCHHHHHHHHCCCCCHHHCHHHHHHHHHCCCEEE
T ss_conf 14878999974999753797440001446232257720104533764158887666006860212254530321143011
Q ss_pred -C-------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH------------------
Q ss_conf -1-------------------11222221001344432123464211111222211024443------------------
Q gi|254780382|r 194 -V-------------------SENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL------------------ 235 (465)
Q Consensus 194 -l-------------------~~~~l~~~~~i~v~~~~~~~~~i~~~~~~~~~~~~~k~~~l------------------ 235 (465)
T Consensus 370 SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L-~~dd~~kIvG~wnGlakr~g~~n 448 (1518)
T COG4889 370 SMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGL-ALDDVSKIVGCWNGLAKRNGEDN 448 (1518)
T ss_pred CCCHHHHHCHHHHCCCHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCCCC-CHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 25526554546621226778764010052589998317665245656306864342-43445677777665665325536
Q ss_pred --HHCCCCCCCCCEEEEEECCCCCCCCCCCCCC-----------C----CCCCCCCCCCCCCHHHHHHHHH---HHCCCC
Q ss_conf --2101223456506776213443222222222-----------2----3322222345420333234444---201355
Q gi|254780382|r 236 --QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLE-----------K----QGFSVCAIHGNIDQRSRMKILS---NFKEGT 295 (465)
Q Consensus 236 --~~l~~~~~~~~k~iIF~~t~~~~~~l~~~L~-----------~----~g~~v~~lhg~l~~~~R~~~~~---~F~~g~ 295 (465)
T Consensus 449 ~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~ne 528 (1518)
T COG4889 449 DLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNE 528 (1518)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCH
T ss_conf 54367677507889999987667788788888999999999997326683688751467300888877886158899421
Q ss_pred CEEEEEHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCC--C-CCEEEEEEE
Q ss_conf 23888846646440788765002002467789988752102458--8-853999977
Q gi|254780382|r 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--G-RHGKAFTLV 349 (465)
Q Consensus 296 ~~vLV~Td~~~~GiDip~v~~VI~~d~P~~~~~y~hR~GR~gR~--g-~~G~~i~~~ 349 (465)
T Consensus 529 ckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 529 CKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred HEEECCCHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 011013315423788534123798668512889999999998727687665699873