HHsearch alignment for GI: 254780382 and conserved domain: PRK00771
>PRK00771 signal recognition particle protein Srp54; Provisional.
Probab=91.29 E-value=0.47 Score=25.69 Aligned_cols=128 Identities=15% Similarity=0.278 Sum_probs=65.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEC--CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999827985178999999999986065214782799982--858999999999874102333221000012222222222
Q gi|254780382|r 41 VCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE--PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 (465)
Q Consensus 41 vi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~--PtreLa~Qi~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~ 118 (465)
T Consensus 100 im~vGlqGsGKTTT~--aKLA~~~kk----~g~kv~lvaaDt~RpaA---~eQL~~la~~~~v~~~---~~~~-~----- 161 (433)
T PRK00771 100 ILLVGLQGSGKTTTA--AKLARYFQK----KGLKVGVICADTWRPGA---YEQLKQLCEKINVPFY---GDPK-E----- 161 (433)
T ss_pred EEEECCCCCCHHHHH--HHHHHHHHH----CCCCEEEEECCCCCHHH---HHHHHHHHHHCCCCCC---CCCC-C-----
T ss_conf 999737889789999--999999997----79946785067883689---9999999986388731---7889-9-----
Q ss_pred CCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCC-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21011221022102333320000001210010255100000-00100357887543102222233343211222211112
Q gi|254780382|r 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRML-DMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSEN 197 (465)
Q Consensus 119 l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l~-~~gf~~~i~~i~~~~~~~~q~i~~SAT~~~~v~~l~~~ 197 (465)
T Consensus 162 -~dp~~i~~-------~a~~~----~k~~DvviiDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~GQ~a~~~a~~ 229 (433)
T PRK00771 162 -KDAVKIVK-------EGLEK----LKKVDVIIVDTAGRHKLEKDLIEEMKQIKEITKPDEVILVIDATIGQQASEQAKA 229 (433)
T ss_pred -CCHHHHHH-------HHHHH----HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH
T ss_conf -99999999-------99998----4569889997765210409999999999877579768998654422678999999
Q ss_pred C
Q ss_conf 2
Q gi|254780382|r 198 F 198 (465)
Q Consensus 198 ~ 198 (465)
T Consensus 230 F 230 (433)
T PRK00771 230 F 230 (433)
T ss_pred H
T ss_conf 9