HHsearch alignment for GI: 254780382 and conserved domain: PRK01172
>PRK01172 ski2-like helicase; Provisional.
Probab=100.00 E-value=0 Score=361.61 Aligned_cols=351 Identities=17% Similarity=0.229 Sum_probs=251.5
Q ss_pred CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECC
Q ss_conf 98436698889999999787987898999999999769979998279851789999999999860652147827999828
Q gi|254780382|r 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80 (465)
Q Consensus 1 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~P 80 (465)
T Consensus 1 m~i~~~~~~~~~~~~~~~~g~-~l~p~Q~ea~~~~~~gkNllvsaPTgsGKTlvAe~ai~~~l~~~------~k~iyi~P 73 (674)
T PRK01172 1 MKISDLGYDDEFLNLFTGNDF-ELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAG------LKSIYIVP 73 (674)
T ss_pred CCHHHCCCCHHHHHHHHHCCC-CCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHC------CCEEEECC
T ss_conf 952332999799999996799-88989999999997799599978999869999999999999858------97999877
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 58999999999874102333221000012222222222210112210221023333200000012100102551000000
Q gi|254780382|r 81 TRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD 160 (465)
Q Consensus 81 treLa~Qi~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l~~ 160 (465)
T Consensus 74 ~kAL~~EK~~~~~~~~-~~g~~v~~~tGd~~~~~~---~~~~~~I~V~T~Ek~~sl~~~~~~~l~~v~~vViDEiH~i~d 149 (674)
T PRK01172 74 LRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGD 149 (674)
T ss_pred HHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCC---CCCCCCEEEECHHHHHHHHHCCCHHHCCCCEEEEECCEECCC
T ss_conf 8999999999999887-379827788538889801---025589999878999999864950221369899826525068
Q ss_pred CCCHHHHHHHH---HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCHHH
Q ss_conf 01003578875---431022222333432112222111122222100134443212346421111-----1222211024
Q gi|254780382|r 161 MGFIPYIQNIT---SLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFV-----ATYAQYSKKC 232 (465)
Q Consensus 161 ~gf~~~i~~i~---~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~~~~~-----~~~~~~~~k~ 232 (465)
T Consensus 150 ~~RG~~lE~~l~kl~~l~~~~qiIgLSATi~N-~~~la~WL-~a~~~~~---~~RPV-pL~~~v~~~~~~~~~~~~~~~~ 223 (674)
T PRK01172 150 EDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQWL-NASLIKS---NFRPV-PLKLGILYRKRLILDGYERSQV 223 (674)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC-HHHHHHHH-CCCEEEC---CCCCC-CCEEEEEECCCCCCCCHHHCCC
T ss_conf 77249999999999853866079971578689-99999883-8855647---99986-6089888346011470432345
Q ss_pred HHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC-------------------------CCCCCCCCCCCCHHHHHHH
Q ss_conf 443210122345650677621344322222222223-------------------------3222223454203332344
Q gi|254780382|r 233 ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ-------------------------GFSVCAIHGNIDQRSRMKI 287 (465)
Q Consensus 233 ~~l~~l~~~~~~~~k~iIF~~t~~~~~~l~~~L~~~-------------------------g~~v~~lhg~l~~~~R~~~ 287 (465)
T Consensus 224 ~~~~l~~~~~~~~~~~LVF~~sR~~~e~~A~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GVafHHaGL~~~eR~lV 303 (674)
T PRK01172 224 DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFI 303 (674)
T ss_pred CHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCHHCCHHHHHCCCHHHHHHHHCCEEEECCCCCHHHHHHH
T ss_conf 39999999996699479995075889999999998532101001031543112099999996282830689998999999
Q ss_pred HHHHCCCCCEEEEEHHHHHHHHCCCCCCEEEE----EC----CCCCHHHHHHHHHCCCCCC--CCEEEEEEECHH-HHHH
Q ss_conf 44201355238888466464407887650020----02----4677899887521024588--853999977888-9999
Q gi|254780382|r 288 LSNFKEGTIQLMVASDLAARGLDIPDVGHVFN----FD----VPNRAENYIHRIGRTGRAG--RHGKAFTLVAKE-DIKH 356 (465)
Q Consensus 288 ~~~F~~g~~~vLV~Td~~~~GiDip~v~~VI~----~d----~P~~~~~y~hR~GR~gR~g--~~G~~i~~~~~~-d~~~ 356 (465)
T Consensus 304 E~~f~~g~i~vl~aT~TLAaGVNlPAr~VIi~~~~r~~~~~~~~l~~~e~~QM~GRAGR~g~D~~G~~ii~~~~~~~~~~ 383 (674)
T PRK01172 304 EEMFRNRYIKVIVATPTLAAGVNLPARLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDA 383 (674)
T ss_pred HHHHHCCCCEEEEECCHHHHHCCCCEEEEEEEEEEEECCCCEEECCHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHH
T ss_conf 99998699649971446765447860599993007817997157778989986135899999988708999728228999
Q ss_pred HHHHHHHHCCCCCCC
Q ss_conf 999999962312304
Q gi|254780382|r 357 IDAIEKLIEKKVDWL 371 (465)
Q Consensus 357 ~~~i~~~~~~~~~~~ 371 (465)
T Consensus 384 ---~~~~l~~~~e~i 395 (674)
T PRK01172 384 ---AKKYLSGEPEPV 395 (674)
T ss_pred ---HHHHHCCCCCCH
T ss_conf ---999852898653