HHsearch alignment for GI: 254780382 and conserved domain: PRK01297
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional.
Probab=100.00 E-value=0 Score=664.67 Aligned_cols=367 Identities=38% Similarity=0.681 Sum_probs=340.1
Q ss_pred CHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCC----CCCCEEEE
Q ss_conf 84366988899999997879878989999999997699799982798517899999999998606521----47827999
Q gi|254780382|r 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRAR----VRMPRTLI 77 (465)
Q Consensus 2 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~----~~~~~~li 77 (465)
T Consensus 85 ~F~dl~L~~~ll~aL~~~Gf~~PTpIQ~~aIP~iL~GkDvi~~A~TGSGKTlAyLLPil~~ll~~~~~~~~~~~~p~aLI 164 (472)
T PRK01297 85 RFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALI 164 (472)
T ss_pred CHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCEEEE
T ss_conf 18647889999999997799999999999999997699889989998679999999999999717751011368952999
Q ss_pred ECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCC
Q ss_conf 8285899999999987410233322100001222222222221-011221022102333320000001210010255100
Q gi|254780382|r 78 LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLE-RGADVLICTPGRILDHFNRGKLLMNNIEILVIDEAD 156 (465)
Q Consensus 78 l~PtreLa~Qi~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~-~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah 156 (465)
T Consensus 165 L~PTRELa~QI~~~~~~L~~~~~l~v~~~~GG~~~~~q~~~l~~~~~dIvVaTPGRL~~l~~~~~~~l~~v~~lVlDEAD 244 (472)
T PRK01297 165 IAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEAD 244 (472)
T ss_pred ECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEECHHHHHHHHCCCCEECCCCEEEEEECHH
T ss_conf 87999999999999999746279769999789887999999855899889979799998743482542552299998731
Q ss_pred CCCCCCCHHHHHHHHHHHCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 00000100357887543102--2222333432112222111122222100134443212346421111122221102444
Q gi|254780382|r 157 RMLDMGFIPYIQNITSLVPF--TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCAL 234 (465)
Q Consensus 157 ~l~~~gf~~~i~~i~~~~~~--~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~~~~~~~~~~~~~k~~~ 234 (465)
T Consensus 245 ~LLd~gf~~~v~~Il~~~p~~~~rQ~~lfSATl~~~v~~l~~~~~~~p~~v~i~~~~~~~~~v~q~~~~~~~--~dk~~~ 322 (472)
T PRK01297 245 RMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAG--SDKYKL 322 (472)
T ss_pred HHHCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEECCH--HHHHHH
T ss_conf 210257599999999968985571699985257789999999977998899965776677760289998188--899999
Q ss_pred HHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCC
Q ss_conf 32101223456506776213443222222222233222223454203332344442013552388884664644078876
Q gi|254780382|r 235 LQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDV 314 (465)
Q Consensus 235 l~~l~~~~~~~~k~iIF~~t~~~~~~l~~~L~~~g~~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~GiDip~v 314 (465)
T Consensus 323 L~~ll~~~-~~~k~IIF~nt~~~~~~l~~~L~~~g~~~~~lhg~l~q~~R~~~l~~F~~g~~~iLVaTDvaaRGLDi~~V 401 (472)
T PRK01297 323 LYNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGI 401 (472)
T ss_pred HHHHHHHC-CCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCC
T ss_conf 99999847-98736896174999999998765449616864377899999999999976999699886613366775788
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 500200246778998875210245888539999778889999999999962312304
Q gi|254780382|r 315 GHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWL 371 (465)
Q Consensus 315 ~~VI~~d~P~~~~~y~hR~GR~gR~g~~G~~i~~~~~~d~~~~~~i~~~~~~~~~~~ 371 (465)
T Consensus 402 ~~VInyD~P~~~~~YIHRiGRTGRaG~~G~aisfv~~~d~~~~~~ie~~l~~~i~~~ 458 (472)
T PRK01297 402 SHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKISCE 458 (472)
T ss_pred CEEEEECCCCCHHHHHHCCCHHHCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCC
T ss_conf 889996898976760102653126899637999863889999999999988978415