HHsearch alignment for GI: 254780382 and conserved domain: PRK02362
>PRK02362 ski2-like helicase; Provisional.
Probab=100.00 E-value=0 Score=362.26 Aligned_cols=337 Identities=20% Similarity=0.302 Sum_probs=245.0
Q ss_pred CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEC
Q ss_conf 9843669888999999978798789899999999-976997999827985178999999999986065214782799982
Q gi|254780382|r 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPL-VLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE 79 (465)
Q Consensus 1 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~~i~~-~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~ 79 (465)
T Consensus 1 m~i~~l~LP~~~~~~~~~~gI~~Lyp~Q~eal~~gl~~g~NlvvsaPTgsGKTlvAElail~~l~~g------~k~vYi~ 74 (736)
T PRK02362 1 MKIADLPLPDGVIDFYEGSGIEELYPPQAEAVEAGLLEGKNLLAAIPTASGKTLLAELAMLKAIAEG------GKALYIV 74 (736)
T ss_pred CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC------CEEEEEC
T ss_conf 9633239998999999976997578999999986435698189979999858999999999999839------9799985
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCC
Q ss_conf 85899999999987410233322100001222222222221011221022102333320000001210010255100000
Q gi|254780382|r 80 PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRML 159 (465)
Q Consensus 80 PtreLa~Qi~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l~ 159 (465)
T Consensus 75 P~kALa~EK~~~~~~~~-~~gi~V~~~tGd~~~~~~--~l-~~~dIiV~T~EK~dsl~r~~~~~l~~v~lVViDEiHli~ 150 (736)
T PRK02362 75 PLRALASEKFEEFSEFS-ELGLRVGISTGDYDRRDE--YL-GRNDIIVATSEKTDSLLRNGAPWIDDISCVVADEVHLID 150 (736)
T ss_pred CHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCHH--HC-CCCCEEEECHHHHHHHHHCCCHHHHCCCEEEEECCEEEC
T ss_conf 87999999999999874-579989998089887831--43-689999999799999984481676508989981767866
Q ss_pred CCCCHHHHHHHHH---HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCC-----
Q ss_conf 0010035788754---3102222233343211222211112222210013444321234642111-----11222-----
Q gi|254780382|r 160 DMGFIPYIQNITS---LVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCF-----VATYA----- 226 (465)
Q Consensus 160 ~~gf~~~i~~i~~---~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~~~~-----~~~~~----- 226 (465)
T Consensus 151 d~~RG~~lE~~lskl~~~~~~iqiIgLSATl~N~-~~la~WL-~a~~-~~--s~~RPV-~L~~~v~~~~~~~~~~~~~~~ 224 (736)
T PRK02362 151 SPNRGPTLEVTLAKLRRLNPDMQVIALSATIGNA-DELAAWL-DAEL-VD--SEWRPV-DLREGVFYGGAIHFKDTEREL 224 (736)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCH-HHHHHHH-CCCC-CC--CCCCCC-CCEEEEEECCEECCCCCCCHH
T ss_conf 8872499999999997338774389862455899-9999983-8862-15--898886-755656507701035100300
Q ss_pred CCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC------------------------------------CC
Q ss_conf 211024443210122345650677621344322222222223------------------------------------32
Q gi|254780382|r 227 QYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ------------------------------------GF 270 (465)
Q Consensus 227 ~~~~k~~~l~~l~~~~~~~~k~iIF~~t~~~~~~l~~~L~~~------------------------------------g~ 270 (465)
T Consensus 225 ~~~~~~~~~~l~~~~~~~~~~~LVF~~SR~~~e~~A~~la~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~L~~~l~~ 304 (736)
T PRK02362 225 EVPSKDEDLNLVLDTLDEGGQCLVFVSSRRNAEAFAKRAASALKKALSAEEREALAGIAEEIREVSETDTSKVLADCVRS 304 (736)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
T ss_conf 02564058999999997399069998249999999999987524215756688999999999734442035999999960
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCEEEE----EC-----CCCCHHHHHHHHHCCCCCC-
Q ss_conf 2222345420333234444201355238888466464407887650020----02-----4677899887521024588-
Q gi|254780382|r 271 SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN----FD-----VPNRAENYIHRIGRTGRAG- 340 (465)
Q Consensus 271 ~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~GiDip~v~~VI~----~d-----~P~~~~~y~hR~GR~gR~g- 340 (465)
T Consensus 305 GVafHHAGL~~~~R~lVE~~Fr~g~Ikvl~aTsTLA~GVNLPAr~VIi~~~~~~~~~~g~~~l~~~e~~QM~GRAGRpg~ 384 (736)
T PRK02362 305 GAAFHHAGLSREHRELVEEGFRDGLIKVISSTPTLAAGLNLPARRVIIRDYRRYDSGAGMQPIPVLEYHQMAGRAGRPRL 384 (736)
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCEEEEEEECCEEECCCCCCEECCHHHHHHHHHHCCCCCC
T ss_conf 94851599998999999999987998389725166505578526999804367369888336889999999852489988
Q ss_pred -CCEEEEEEECHHH
Q ss_conf -8539999778889
Q gi|254780382|r 341 -RHGKAFTLVAKED 353 (465)
Q Consensus 341 -~~G~~i~~~~~~d 353 (465)
T Consensus 385 D~~G~aili~~~~~ 398 (736)
T PRK02362 385 DPYGEAVLLAKSYD 398 (736)
T ss_pred CCCCEEEEEECCHH
T ss_conf 98862999967827