HHsearch alignment for GI: 254780382 and conserved domain: PRK04537
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional.
Probab=100.00 E-value=0 Score=680.31 Aligned_cols=373 Identities=37% Similarity=0.618 Sum_probs=342.8
Q ss_pred CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC----CCCCCCEEE
Q ss_conf 9843669888999999978798789899999999976997999827985178999999999986065----214782799
Q gi|254780382|r 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR----ARVRMPRTL 76 (465)
Q Consensus 1 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~----~~~~~~~~l 76 (465)
T Consensus 9 ~SF~~LgL~~~Ll~aL~~~Gf~~PTpIQ~~aIP~iL~GkDvi~~A~TGSGKTLAYlLPiL~~Ll~~~~l~~~~~~~p~aL 88 (574)
T PRK04537 9 LTFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (574)
T ss_pred CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
T ss_conf 81866698999999999779998999999999999579988998489888999999999999983744345778996199
Q ss_pred EECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCC-CCCCCCEEECCCCC
Q ss_conf 98285899999999987410233322100001222222222221011221022102333320000-00121001025510
Q gi|254780382|r 77 ILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGK-LLMNNIEILVIDEA 155 (465)
Q Consensus 77 il~PtreLa~Qi~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~-~~l~~~~~lViDEa 155 (465)
T Consensus 89 ILvPTRELA~QI~~~~~~l~~~~~lr~~~l~GG~~~~~q~~~L~~g~dIVVaTPGRLld~L~~~~~~~L~~vk~LVLDEA 168 (574)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (574)
T ss_pred EECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf 97798999999999999986458977999979966889999873599989989899999998179865333158996273
Q ss_pred CCCCCCCCHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 0000001003578875431022--22233343211222211112222210013444321234642111112222110244
Q gi|254780382|r 156 DRMLDMGFIPYIQNITSLVPFT--RQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCA 233 (465)
Q Consensus 156 h~l~~~gf~~~i~~i~~~~~~~--~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~~~~~~~~~~~~~k~~ 233 (465)
T Consensus 169 D~LLd~gF~~di~~IL~~lP~~~~rQ~iLfSATl~~~V~~la~~~l~~P~~i~v~~~~~~~~~I~Q~~~~~~--~~~K~~ 246 (574)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPS--DEEKQT 246 (574)
T ss_pred HHHHCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEECC--HHHHHH
T ss_conf 265428779999999996665568558999832777999999997799869996566545776038999777--789999
Q ss_pred HHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCC
Q ss_conf 43210122345650677621344322222222223322222345420333234444201355238888466464407887
Q gi|254780382|r 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPD 313 (465)
Q Consensus 234 ~l~~l~~~~~~~~k~iIF~~t~~~~~~l~~~L~~~g~~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~GiDip~ 313 (465)
T Consensus 247 ~L~~LL~~~-~~~k~IIF~nT~~~ve~l~~~L~~~g~~v~~LHG~lsQ~eR~~~L~~Fk~G~~~VLVaTDVAARGIDIp~ 325 (574)
T PRK04537 247 LLLGLLSRS-EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDG 325 (574)
T ss_pred HHHHHHHHC-CCCCCEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCC
T ss_conf 999999726-7765115334189999999999977996899709999999999999997699979977350023357146
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 650020024677899887521024588853999977888999999999996231230446366
Q gi|254780382|r 314 VGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376 (465)
Q Consensus 314 v~~VI~~d~P~~~~~y~hR~GR~gR~g~~G~~i~~~~~~d~~~~~~i~~~~~~~~~~~~~~~~ 376 (465)
T Consensus 326 V~~VINYDlP~~~e~YVHRIGRTGRaGr~G~AITfv~~~e~~~l~~IE~~i~~~ip~~~~~~~ 388 (574)
T PRK04537 326 VKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPVEPVTAE 388 (574)
T ss_pred CCEEEEECCCCCHHHHHCCCCHHHCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf 997999579698214112453503789933599987779989999999986787888665442