HHsearch alignment for GI: 254780382 and conserved domain: PRK05298
>PRK05298 excinuclease ABC subunit B; Provisional.
Probab=99.94 E-value=6.5e-26 Score=186.07 Aligned_cols=146 Identities=22% Similarity=0.353 Sum_probs=120.6
Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 11122221102444321012234565067762134432222222222332222234542033323444420135523888
Q gi|254780382|r 221 FVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMV 300 (465)
Q Consensus 221 ~~~~~~~~~~k~~~l~~l~~~~~~~~k~iIF~~t~~~~~~l~~~L~~~g~~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV 300 (465)
T Consensus 422 ~ievrp~~~Qiddl~~ei~~~~~~~er~LvttlTkkmaEdLt~yl~~~~ik~~YlHs~i~t~eR~eIl~~LR~G~~DVlV 501 (657)
T PRK05298 422 EIEVRPTKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLV 501 (657)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 45996487879999999999963697699995459899999999996798079962666188999999998588875897
Q ss_pred EHHHHHHHHCCCCCCEEEEEC-----CCCCHHHHHHHHHCCCCCCCCEEEEEEECH---------HHHHHHHHHHHHHCC
Q ss_conf 846646440788765002002-----467789988752102458885399997788---------899999999999623
Q gi|254780382|r 301 ASDLAARGLDIPDVGHVFNFD-----VPNRAENYIHRIGRTGRAGRHGKAFTLVAK---------EDIKHIDAIEKLIEK 366 (465)
Q Consensus 301 ~Td~~~~GiDip~v~~VI~~d-----~P~~~~~y~hR~GR~gR~g~~G~~i~~~~~---------~d~~~~~~i~~~~~~ 366 (465)
T Consensus 502 GINLLREGLDlPEVSLVaILDADKeGFLRs~~SLiQtiGRAAR-N~~G~vIlYAD~iT~SM~~ai~ET~rRR~iQ~~yN~ 580 (657)
T PRK05298 502 GINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKVILYADKITDSMQKAIDETERRREIQIAYNE 580 (657)
T ss_pred EECHHHCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHH-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5002204578761357988706852210352059999878862-579749998154509999999999989999999999
Q ss_pred C
Q ss_conf 1
Q gi|254780382|r 367 K 367 (465)
Q Consensus 367 ~ 367 (465)
T Consensus 581 ~ 581 (657)
T PRK05298 581 E 581 (657)
T ss_pred H
T ss_conf 5