HHsearch alignment for GI: 254780382 and conserved domain: PRK05580
>PRK05580 primosome assembly protein PriA; Validated.
Probab=99.93 E-value=2.1e-24 Score=176.31 Aligned_cols=321 Identities=21% Similarity=0.281 Sum_probs=183.1
Q ss_pred CCCCHHHHHHHHHCCC---------------------CCCCHHHHHHHHHHHCC---CCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 6988899999997879---------------------87898999999999769---97999827985178999999999
Q gi|254780382|r 6 LGLSPKVVCAVLDAGY---------------------VKPTPIQIKTIPLVLQR---HDVCGIAQTGTGKTASFVLPMLT 61 (465)
Q Consensus 6 l~l~~~l~~~l~~~~~---------------------~~pt~iQ~~~i~~~l~g---~dvi~~apTGsGKT~~~~lp~l~ 61 (465)
T Consensus 130 ~~~s~~~l~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~eQ~~a~~~i~~~~~~~~~LL~GvTGSGKTevYl~li~~ 209 (699)
T PRK05580 130 AGVSASVLKGLAKKGLIEIVERPPLRLRDPPDPDTEPPTLNEEQAAALAAIRAAGGFSAFLLDGVTGSGKTEVYLQAIAE 209 (699)
T ss_pred CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf 28988999999978971675321456543344456787889999999999985588871787478986079999999999
Q ss_pred HHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC----CCHHHHHHCCCCHHHHHH
Q ss_conf 9860652147827999828589999999998741023332210000122222222222----101122102210233332
Q gi|254780382|r 62 ILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL----ERGADVLICTPGRILDHF 137 (465)
Q Consensus 62 ~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~TP~rl~~~l 137 (465)
T Consensus 210 ~l~~G------kqvLiLvPEI~lt~q~~~rl~~~---fg~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGt-------- 272 (699)
T PRK05580 210 ALAQG------KQALVLVPEIALTPQLLARFRAR---FGARVAVLHSGLSDGERYRAWLAALRGEARVVIGT-------- 272 (699)
T ss_pred HHHCC------CCEEEEECCHHHHHHHHHHHHHH---HCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEEC--------
T ss_conf 99739------97899917678789999999987---09957996488985799999999976997199973--------
Q ss_pred HCCCC--CCCCCEEECCCCCCCCC---CCCC---HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00000--01210010255100000---0010---0357887543102222233343211222211112222210013444
Q gi|254780382|r 138 NRGKL--LMNNIEILVIDEADRML---DMGF---IPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNT 209 (465)
Q Consensus 138 ~~~~~--~l~~~~~lViDEah~l~---~~gf---~~~i~~i~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~ 209 (465)
T Consensus 273 -RSAvFaP~~nLgLIIVDEEhd~SYKq~~~Pry~ARdvA~-~Ra~~~~~~liLgSaTPSlEs~~~~~~--g~~~~~~l~~ 348 (699)
T PRK05580 273 -RSALFAPFKNLGLIIVDEEHDDSYKQQDGPRYHARDVAV-LRAKQEGCPVVLGSATPSLESLANAES--GKYHLLRLTR 348 (699)
T ss_pred -CCEEECCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHH-HHHHHHCCCEEECCCCCCHHHHHHHHC--CCCEEECCCC
T ss_conf -601106578984899973654544466687611999999-999984998896168999999999975--9976644653
Q ss_pred C--CCCCCCCCCCCCCCCCC----CCH-HHHHHHHCCCCCCCCCEEEEEECCCCCCC--------------CCCCCCCC-
Q ss_conf 3--21234642111112222----110-24443210122345650677621344322--------------22222222-
Q gi|254780382|r 210 P--SSTAETIEHCFVATYAQ----YSK-KCALLQQLLQSQDTMKNGIIFCNQKKNVV--------------NLCHSLEK- 267 (465)
Q Consensus 210 ~--~~~~~~i~~~~~~~~~~----~~~-k~~~l~~l~~~~~~~~k~iIF~~t~~~~~--------------~l~~~L~~- 267 (465)
T Consensus 349 r~~~~~~P~v~--ivDm~~~~~~~~~~ls~~l~~~i~~~L~~g~qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~~L~~h 426 (699)
T PRK05580 349 RAGAAALPRVE--IIDMREEPLERGAGLSPPLLEAIREALERGEQVLLFLNRRGYAPFLLCRDCGWVARCPHCDGPLTLH 426 (699)
T ss_pred CCCCCCCCEEE--ECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEECHHCCCEEECCCCCCEEEEC
T ss_conf 22347898379--3354214100257546999999999997388479995477522514745319945656789863420
Q ss_pred -----------------------------------------------CCCCCCCCCCCCC--HHHHHHHHHHHCCCCCEE
Q ss_conf -----------------------------------------------3322222345420--333234444201355238
Q gi|254780382|r 268 -----------------------------------------------QGFSVCAIHGNID--QRSRMKILSNFKEGTIQL 298 (465)
Q Consensus 268 -----------------------------------------------~g~~v~~lhg~l~--~~~R~~~~~~F~~g~~~v 298 (465)
T Consensus 427 ~~~~~l~Ch~Cg~~~~~~~~Cp~Cgs~~l~~~g~Gteri~eel~~~FP~~~i~r~d~d~~~~~~~~~~~~~~~~~~~~dI 506 (699)
T PRK05580 427 RAGRRLRCHHCGYQEPIPRACPECGSTDLRAVGVGTERTEEELARLFPGARVLRIDRDTTRRKGALEQLLEDFARGEADI 506 (699)
T ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCE
T ss_conf 68983322646883657554656799752411168599999999778999889984755678631688999974689878
Q ss_pred EEEHHHHHHHHCCCCCCEEEEEC------CCC--CHHHH----HHHHHCCCCCCCCEEEEEEE
Q ss_conf 88846646440788765002002------467--78998----87521024588853999977
Q gi|254780382|r 299 MVASDLAARGLDIPDVGHVFNFD------VPN--RAENY----IHRIGRTGRAGRHGKAFTLV 349 (465)
Q Consensus 299 LV~Td~~~~GiDip~v~~VI~~d------~P~--~~~~y----~hR~GR~gR~g~~G~~i~~~ 349 (465)
T Consensus 507 lvGTqmiakG~df~~v~lv~vldaD~~l~~pd~ra~E~~~qll~qvagragr~~~~g~viiQt 569 (699)
T PRK05580 507 LVGTQMLAKGHDFPNVTLVGVLDADTGLFSPDFRAAERTFQLLTQVAGRAGRAEKPGEVLIQT 569 (699)
T ss_pred EECCCCCCCCCCCCCEEEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 977733455677776269987322653548883479999999999987655678898799993