HHsearch alignment for GI: 254780382 and conserved domain: PRK05580
>PRK05580 primosome assembly protein PriA; Validated.
Probab=96.37 E-value=0.0025 Score=40.32 Aligned_cols=77 Identities=12% Similarity=0.179 Sum_probs=50.1
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCEEEE
Q ss_conf 34565067762134432222222222-3322222345420333234444201355238888466464407887650020
Q gi|254780382|r 242 QDTMKNGIIFCNQKKNVVNLCHSLEK-QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319 (465)
Q Consensus 242 ~~~~~k~iIF~~t~~~~~~l~~~L~~-~g~~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~GiDip~v~~VI~ 319 (465)
T Consensus 211 l~~GkqvLiLvPEI~lt~q~~~rl~~~fg~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAv-FaP~~nLgLIIV 288 (699)
T PRK05580 211 LAQGKQALVLVPEIALTPQLLARFRARFGARVAVLHSGLSDGERYRAWLAALRGEARVVIGTRSAL-FAPFKNLGLIIV 288 (699)
T ss_pred HHCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCEE-ECCCCCCCEEEE
T ss_conf 973997899917678789999999987099579964889857999999999769971999736011-065789848999