HHsearch alignment for GI: 254780382 and conserved domain: PRK10689
>PRK10689 transcription-repair coupling factor; Provisional.
Probab=96.12 E-value=0.0048 Score=38.51 Aligned_cols=85 Identities=11% Similarity=0.201 Sum_probs=66.2
Q ss_pred HHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCC----CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHH-HHHHH
Q ss_conf 432101223456506776213443222222222----2332222234542033323444420135523888846-64644
Q gi|254780382|r 234 LLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLE----KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD-LAARG 308 (465)
Q Consensus 234 ~l~~l~~~~~~~~k~iIF~~t~~~~~~l~~~L~----~~g~~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td-~~~~G 308 (465)
T Consensus 638 A~RAAFkav~~gkQVavlvPTTiLA~QH~~tF~~Rf~~~pv~i~~LsRf~s~ke~~~i~~~l~~G~idIvIGTH~ll~~d 717 (1148)
T PRK10689 638 AMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSD 717 (1148)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHCCC
T ss_conf 99999999963980899836622379999999987641573377503888899999999998669987762048886698
Q ss_pred HCCCCCCEEE
Q ss_conf 0788765002
Q gi|254780382|r 309 LDIPDVGHVF 318 (465)
Q Consensus 309 iDip~v~~VI 318 (465)
T Consensus 718 v~f~~LGLlI 727 (1148)
T PRK10689 718 VKWKDLGLLI 727 (1148)
T ss_pred CCCCCCCEEE
T ss_conf 6546664378