HHsearch alignment for GI: 254780382 and conserved domain: PRK10875

>PRK10875 recD exonuclease V subunit alpha; Provisional.
Probab=97.99  E-value=0.00026  Score=46.72  Aligned_cols=155  Identities=23%  Similarity=0.306  Sum_probs=82.3

Q ss_pred             CCHHHHHHHHHCCCC--CCCHHHHHHHHHHHCCCCEEEECCCCCCHHHH--HHHHHHHHHHCCCCCCCCCEEEEECCCHH
Q ss_conf             888999999978798--78989999999997699799982798517899--99999999860652147827999828589
Q gi|254780382|r    8 LSPKVVCAVLDAGYV--KPTPIQIKTIPLVLQRHDVCGIAQTGTGKTAS--FVLPMLTILEKGRARVRMPRTLILEPTRE   83 (465)
Q Consensus         8 l~~~l~~~l~~~~~~--~pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~--~~lp~l~~l~~~~~~~~~~~~lil~Ptre   83 (465)
T Consensus       130 ~~~~~~~~~L~~lf~~~~~~dwQk~A~a~Al~~~~~vIsGGPGTGKTttV~~lLa~l~~~~----~~~~l~I~LaAPTGK  205 (607)
T PRK10875        130 VDEALLAQTLDALFPPGDEVNWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLA----DGERCRIRLAAPTGK  205 (607)
T ss_pred             CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHC----CCCCCEEEEECCHHH
T ss_conf             9989999999985799888518999999987557789967999877889999999999964----589970899882289


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHC------CCCCCCCCEEECCCCCCC
Q ss_conf             99999999874102333221000012222222222210112210221023333200------000012100102551000
Q gi|254780382|r   84 LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR------GKLLMNNIEILVIDEADR  157 (465)
Q Consensus        84 La~Qi~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~------~~~~l~~~~~lViDEah~  157 (465)
T Consensus       206 AAaRL~Esi~~~~~~l~~~----------~~~~~~~p~~----a~TiHRLLg~~p~~~~f~~~~~nPL~~DvlIVDEAS-  270 (607)
T PRK10875        206 AAARLTESLGKALRQLPLT----------DEQKKRIPED----ASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEAS-  270 (607)
T ss_pred             HHHHHHHHHHHHHHHCCCC----------HHHHHCCCCC----CEEHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCH-
T ss_conf             9999999998787534766----------5666337655----665897529678987656577999988989990733-


Q ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             000010035788754310222223334
Q gi|254780382|r  158 MLDMGFIPYIQNITSLVPFTRQTLLFS  184 (465)
Q Consensus       158 l~~~gf~~~i~~i~~~~~~~~q~i~~S  184 (465)
T Consensus       271 MVDl---~Lm~~LL~Alp~~aRLILvG  294 (607)
T PRK10875        271 MIDL---PMMSRLIDALPDHARVIFLG  294 (607)
T ss_pred             HHHH---HHHHHHHHHCCCCCEEEEEC
T ss_conf             6659---99999998289998899965