HHsearch alignment for GI: 254780382 and conserved domain: PRK10875
>PRK10875 recD exonuclease V subunit alpha; Provisional.
Probab=97.99 E-value=0.00026 Score=46.72 Aligned_cols=155 Identities=23% Similarity=0.306 Sum_probs=82.3
Q ss_pred CCHHHHHHHHHCCCC--CCCHHHHHHHHHHHCCCCEEEECCCCCCHHHH--HHHHHHHHHHCCCCCCCCCEEEEECCCHH
Q ss_conf 888999999978798--78989999999997699799982798517899--99999999860652147827999828589
Q gi|254780382|r 8 LSPKVVCAVLDAGYV--KPTPIQIKTIPLVLQRHDVCGIAQTGTGKTAS--FVLPMLTILEKGRARVRMPRTLILEPTRE 83 (465)
Q Consensus 8 l~~~l~~~l~~~~~~--~pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~--~~lp~l~~l~~~~~~~~~~~~lil~Ptre 83 (465)
T Consensus 130 ~~~~~~~~~L~~lf~~~~~~dwQk~A~a~Al~~~~~vIsGGPGTGKTttV~~lLa~l~~~~----~~~~l~I~LaAPTGK 205 (607)
T PRK10875 130 VDEALLAQTLDALFPPGDEVNWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLA----DGERCRIRLAAPTGK 205 (607)
T ss_pred CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHC----CCCCCEEEEECCHHH
T ss_conf 9989999999985799888518999999987557789967999877889999999999964----589970899882289
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHC------CCCCCCCCEEECCCCCCC
Q ss_conf 99999999874102333221000012222222222210112210221023333200------000012100102551000
Q gi|254780382|r 84 LAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR------GKLLMNNIEILVIDEADR 157 (465)
Q Consensus 84 La~Qi~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~------~~~~l~~~~~lViDEah~ 157 (465)
T Consensus 206 AAaRL~Esi~~~~~~l~~~----------~~~~~~~p~~----a~TiHRLLg~~p~~~~f~~~~~nPL~~DvlIVDEAS- 270 (607)
T PRK10875 206 AAARLTESLGKALRQLPLT----------DEQKKRIPED----ASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEAS- 270 (607)
T ss_pred HHHHHHHHHHHHHHHCCCC----------HHHHHCCCCC----CEEHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCH-
T ss_conf 9999999998787534766----------5666337655----665897529678987656577999988989990733-
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 000010035788754310222223334
Q gi|254780382|r 158 MLDMGFIPYIQNITSLVPFTRQTLLFS 184 (465)
Q Consensus 158 l~~~gf~~~i~~i~~~~~~~~q~i~~S 184 (465)
T Consensus 271 MVDl---~Lm~~LL~Alp~~aRLILvG 294 (607)
T PRK10875 271 MIDL---PMMSRLIDALPDHARVIFLG 294 (607)
T ss_pred HHHH---HHHHHHHHHCCCCCEEEEEC
T ss_conf 6659---99999998289998899965