HHsearch alignment for GI: 254780382 and conserved domain: PRK11131
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional.
Probab=99.94 E-value=7.2e-26 Score=185.78 Aligned_cols=299 Identities=20% Similarity=0.308 Sum_probs=187.1
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEE--CCCHHHHHHHHHHH-HHHCCCCCCCCCCCC
Q ss_conf 999997699799982798517899999999998606521478279998--28589999999998-741023332210000
Q gi|254780382|r 31 TIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLIL--EPTRELAAQVADNF-EKYGKNYNLTVALLI 107 (465)
Q Consensus 31 ~i~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil--~PtreLa~Qi~~~~-~~~~~~~~l~~~~~~ 107 (465)
T Consensus 82 i~~~i~~nqVvii~GeTGsGKTT--QiPq~--~le~---g~g~~~~I~~TQPRRiAA~svA~RVA~E~~~~lG~~VGY~V 154 (1295)
T PRK11131 82 ILEAIRDHQVVIVAGETGSGKTT--QLPKI--CLEL---GRGIKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKV 154 (1295)
T ss_pred HHHHHHHCCEEEEECCCCCCHHH--HHHHH--HHHC---CCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 99999979969997689998788--99999--9962---79999989977965999999999999981999899888894
Q ss_pred CCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCC-CCCCCHH-HHHHHHHHHCCCCCCCCCCC
Q ss_conf 122222222222101122102210233332000000121001025510000-0001003-57887543102222233343
Q gi|254780382|r 108 GGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM-LDMGFIP-YIQNITSLVPFTRQTLLFSA 185 (465)
Q Consensus 108 gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l-~~~gf~~-~i~~i~~~~~~~~q~i~~SA 185 (465)
T Consensus 155 Rf~~------~~s~~t~i~~~TdGiLL~e~~~d~-~L~~y~~iIiDEaHERsl~~D~LLg~Lk~ll~~-R~dLKvIimSA 226 (1295)
T PRK11131 155 RFND------QVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPDLKVIITSA 226 (1295)
T ss_pred CCCC------CCCCCCEEEEECCHHHHHHHHHCC-CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECC
T ss_conf 5698------879997799976569999862099-878877799868556880199999999999833-99988999558
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CHHH-------HHHHHCCCCCCCCCEEEEEECCCCC
Q ss_conf 2112222111122222100134443212346421111122221-1024-------4432101223456506776213443
Q gi|254780382|r 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY-SKKC-------ALLQQLLQSQDTMKNGIIFCNQKKN 257 (465)
Q Consensus 186 T~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~~~~~~~~~~~-~~k~-------~~l~~l~~~~~~~~k~iIF~~t~~~ 257 (465)
T Consensus 227 Tid~--e~fs~-yF~~apvi~v~Gr~~P---Vev~y~p~~~~~~~~~~d~~~~i~~~v~~~~--~~~~GdILVFLpG~~E 298 (1295)
T PRK11131 227 TIDP--ERFSR-HFNNAPIIEVSGRTYP---VEVRYRPIVEEADDTERDQLQAIFDAVDELG--RESPGDILIFMSGERE 298 (1295)
T ss_pred CCCH--HHHHH-HCCCCCEEEECCCCCC---EEEEEECCCCCCCCHHHHHHHHHHHHHHHHH--CCCCCCEEEECCCHHH
T ss_conf 6897--99996-5799998987891788---6757636866544215899999999999985--4899877986697999
Q ss_pred CCCCCCCCCCC---CCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCEEEEE--------C-----
Q ss_conf 22222222223---3222223454203332344442013552388884664644078876500200--------2-----
Q gi|254780382|r 258 VVNLCHSLEKQ---GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNF--------D----- 321 (465)
Q Consensus 258 ~~~l~~~L~~~---g~~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~GiDip~v~~VI~~--------d----- 321 (465)
T Consensus 299 I~~~~~~L~~~~~~~~~ilPL~s~ls~~eQ~~vF~p--~~~RkIVlaTNIAETSlTIp~I~yVIDsG~~k~~~y~~~~~~ 376 (1295)
T PRK11131 299 IRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKV 376 (1295)
T ss_pred HHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHCC--CCCCEEEEECCCCCCCCEECCEEEEEECCCEEEEEECCCCCC
T ss_conf 999999986148988769865578999999998488--997338984052000100056489993784010047577786
Q ss_pred -----CCCCHHHHHHHHHCCCCCCCCEEEEEEECHHHHH
Q ss_conf -----4677899887521024588853999977888999
Q gi|254780382|r 322 -----VPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIK 355 (465)
Q Consensus 322 -----~P~~~~~y~hR~GR~gR~g~~G~~i~~~~~~d~~ 355 (465)
T Consensus 377 ~~L~~~~iSqAsA~QR~GRaGR~-~~G~C~RLyse~~~~ 414 (1295)
T PRK11131 377 QRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFL 414 (1295)
T ss_pred CEEEEEEECHHHHHHHHHHHCCC-CCCEEEEEECHHHHH
T ss_conf 64667870165698750540788-995399983598885