HHsearch alignment for GI: 254780382 and conserved domain: PRK11192
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional.
Probab=100.00 E-value=0 Score=670.63 Aligned_cols=370 Identities=38% Similarity=0.666 Sum_probs=341.4
Q ss_pred CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC-CCCCCCCCEEEEEC
Q ss_conf 98436698889999999787987898999999999769979998279851789999999999860-65214782799982
Q gi|254780382|r 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEK-GRARVRMPRTLILE 79 (465)
Q Consensus 1 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~-~~~~~~~~~~lil~ 79 (465)
T Consensus 3 ~sF~~l~L~~~l~~~L~~~g~~~pT~IQ~~aIp~il~g~dvl~~A~TGSGKTlaylLPil~~l~~~~~~~~~~~~~LIl~ 82 (417)
T PRK11192 3 TTFEELDLDPSLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILT 82 (417)
T ss_pred CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 88777798999999999779999999999999999779988998999867999999999999875210368996499994
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCC
Q ss_conf 85899999999987410233322100001222222222221011221022102333320000001210010255100000
Q gi|254780382|r 80 PTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRML 159 (465)
Q Consensus 80 PtreLa~Qi~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l~ 159 (465)
T Consensus 83 PTrELa~Qi~~~~~~l~~~~~i~~~~i~Gg~~~~~q~~~l~~~~dIlV~TPgRL~~~l~~~~~~l~~l~~lVlDEAD~ml 162 (417)
T PRK11192 83 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRML 162 (417)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCCCCEEEEECCCCCC
T ss_conf 71999999999999864005730599856878799999983699989978607777886367010457489996755211
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 00100357887543102222233343211-22221111222221001344432123464211111222211024443210
Q gi|254780382|r 160 DMGFIPYIQNITSLVPFTRQTLLFSATMT-DELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQL 238 (465)
Q Consensus 160 ~~gf~~~i~~i~~~~~~~~q~i~~SAT~~-~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~~~~~~~~~~~~~k~~~l~~l 238 (465)
T Consensus 163 d~gF~~~i~~I~~~~~~~~Q~llfSATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~q~~~~~~-~~~~k~~~L~~l 241 (417)
T PRK11192 163 DMGFAQDVEHIAAETRWRKQTLLFSATLEGDGVQDFAERLLNDPVEVDAEPSRRERKKIHQWYYRAD-DLEHKTALLCHL 241 (417)
T ss_pred CCCCHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEEC-CHHHHHHHHHHH
T ss_conf 1354789999986476772389997326847899999983679889996467666674369999937-689999999999
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCEEE
Q ss_conf 12234565067762134432222222222332222234542033323444420135523888846646440788765002
Q gi|254780382|r 239 LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF 318 (465)
Q Consensus 239 ~~~~~~~~k~iIF~~t~~~~~~l~~~L~~~g~~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~GiDip~v~~VI 318 (465)
T Consensus 242 l~~~~-~~k~iIF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~V~~VI 320 (417)
T PRK11192 242 LKQEE-VTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQKKRNEAIKRLTDGRVNVLVATDVAARGIDIDDISHVI 320 (417)
T ss_pred HHCCC-CCCCEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCEEE
T ss_conf 85347-66521531124667689886531488357540017999999999999769998999812434677704698899
Q ss_pred EECCCCCHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 002467789988752102458885399997788899999999999623123044
Q gi|254780382|r 319 NFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLN 372 (465)
Q Consensus 319 ~~d~P~~~~~y~hR~GR~gR~g~~G~~i~~~~~~d~~~~~~i~~~~~~~~~~~~ 372 (465)
T Consensus 321 nyd~P~~~~~YvHRiGRTGR~G~~G~ait~v~~~d~~~~~~ie~~~~~~~~~~~ 374 (417)
T PRK11192 321 NFDMPRSADTYLHRIGRTGRAGKKGTAISLVEAHDHLLLGKIERYIEEPLKRRV 374 (417)
T ss_pred EECCCCCHHHHHHHCCHHHCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 979999888923306772348995489998748999999999999779887312