HHsearch alignment for GI: 254780382 and conserved domain: PRK11448
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional.
Probab=99.93 E-value=1.1e-24 Score=178.17 Aligned_cols=316 Identities=21% Similarity=0.284 Sum_probs=186.8
Q ss_pred CCCHHHHHHHHHHH----CC-CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCC
Q ss_conf 78989999999997----69-97999827985178999999999986065214782799982858999999999874102
Q gi|254780382|r 23 KPTPIQIKTIPLVL----QR-HDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK 97 (465)
Q Consensus 23 ~pt~iQ~~~i~~~l----~g-~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~~~ 97 (465)
T Consensus 416 ~lR~YQ~~AI~~v~~a~~~~~rraLl~MATGTGKTrt-aial~~rLlk~~---~~kRILFLvDR~~L~~QA~~~F~~~~~ 491 (1126)
T PRK11448 416 GLRYYQEDAIQAVEKALANGQREILLAMATGTGKTRT-AIALMYRLLKAK---RFKRILFLVDRRALGEQALDAFKDTKI 491 (1126)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH-HHHHHHHHHHCC---CCCEEEEECCHHHHHHHHHHHHHHCCC
T ss_conf 7868899999999999980985468872488858989-999999999658---767257985658999999998754345
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHC----CCCCCCCCEEECCCCCCC-------CCC--CCCH
Q ss_conf 333221000012222222222210112210221023333200----000012100102551000-------000--0100
Q gi|254780382|r 98 NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNR----GKLLMNNIEILVIDEADR-------MLD--MGFI 164 (465)
Q Consensus 98 ~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~----~~~~l~~~~~lViDEah~-------l~~--~gf~ 164 (465)
T Consensus 492 ~~~~~~~~~~~v~~l~--~~~~~~~~rv~isT~q~m~~~i~~~~~~~~~~~~~FDlIIiDEaHRgy~ld~em~e~e~~~r 569 (1126)
T PRK11448 492 EGNQTFASIYDIKGLT--DKFPEDETKVHVATVQSMVKRILQSDDSEPPPVGQYDCIVVDEAHRGYTLDKEMTEGELQFR 569 (1126)
T ss_pred CCCCCCCHHHHHHHCC--CCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHCCC
T ss_conf 4566640022001025--67878777199973078998752357677999985137989778788743323110001023
Q ss_pred H------HHHHHHHHHCCCCCCCCCCCCCCCCCCCC--------------CCCCCCC---CCCCCCCCCCCCCCCCCC--
Q ss_conf 3------57887543102222233343211222211--------------1122222---100134443212346421--
Q gi|254780382|r 165 P------YIQNITSLVPFTRQTLLFSATMTDELQKV--------------SENFLQN---PKRIEVNTPSSTAETIEH-- 219 (465)
Q Consensus 165 ~------~i~~i~~~~~~~~q~i~~SAT~~~~v~~l--------------~~~~l~~---~~~i~v~~~~~~~~~i~~-- 219 (465)
T Consensus 570 d~~s~~skyr~IldYFD--A~~iGLTATP~~~T~~~Fg~P~~~Ys~~eAV~DG~LVd~~~P~~i~T~l---~~~Gi~~~~ 644 (1126)
T PRK11448 570 DQLDYVSKYRRVLDYFD--AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETKL---AKEGIHFEK 644 (1126)
T ss_pred CHHHHHHHHHHHHHHHH--HHHHCCCCCCCCCHHHHHCCCCEEECHHHHHCCCCCCCCCCCEEEEEEE---ECCCCCCCC
T ss_conf 20247778999987621--5540476799955567709973000588873047556886887997565---104603587
Q ss_pred ---------------------CCCCCCCCCC-------HHHHHHHHCCCC--CCCCCEEEEEECCCCCCCCCCCCCCCC-
Q ss_conf ---------------------1111222211-------024443210122--345650677621344322222222223-
Q gi|254780382|r 220 ---------------------CFVATYAQYS-------KKCALLQQLLQS--QDTMKNGIIFCNQKKNVVNLCHSLEKQ- 268 (465)
Q Consensus 220 ---------------------~~~~~~~~~~-------~k~~~l~~l~~~--~~~~~k~iIF~~t~~~~~~l~~~L~~~- 268 (465)
T Consensus 645 ~e~~~~~~~~~~~~~~~~~~de~~~~~~~fnr~v~~~~~nr~v~~~l~~~~~~~~~gKTiIFA~~~~HAd~Iv~~l~e~F 724 (1126)
T PRK11448 645 GEQVEVINTQTGEIDNDTLEDELDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFCVTDAHADMVVRLLKEAF 724 (1126)
T ss_pred CCHHHHCCCHHHHHHCCCCCCCCCCCHHHHCCHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHH
T ss_conf 64344203000002025587313378888273203834799999999984588999876999278699999999999998
Q ss_pred --------CCCCCCCCCCCCHHHHHHHHHHHCCCCC-EEEEEHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf --------3222223454203332344442013552-3888846646440788765002002467789988752102458
Q gi|254780382|r 269 --------GFSVCAIHGNIDQRSRMKILSNFKEGTI-QLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA 339 (465)
Q Consensus 269 --------g~~v~~lhg~l~~~~R~~~~~~F~~g~~-~vLV~Td~~~~GiDip~v~~VI~~d~P~~~~~y~hR~GR~gR~ 339 (465)
T Consensus 725 ~~~y~~~~~~~~~~It~~~~~~--~~lI~~Fkn~~~P~IAVTVDmL~TGiDVPei~nLVF~R~V~S~i~F~QMiGRGTRl 802 (1126)
T PRK11448 725 KKKYGQVEDDAIIKITGDADKV--QQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVKSRILYEQMKGRATRL 802 (1126)
T ss_pred HHHCCCCCCCEEEEEECCCCCH--HHHHHHHCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCHHHHHHHHCCCCCC
T ss_conf 8647876784489970888447--89999725789983899856210476664201688766756677866541675543
Q ss_pred CC-CE-EEEEEECH
Q ss_conf 88-53-99997788
Q gi|254780382|r 340 GR-HG-KAFTLVAK 351 (465)
Q Consensus 340 g~-~G-~~i~~~~~ 351 (465)
T Consensus 803 c~~i~K~~F~I~Da 816 (1126)
T PRK11448 803 CPDIGKTVFRIFDA 816 (1126)
T ss_pred CCCCCCCEEEEEEC
T ss_conf 76668766999601