HHsearch alignment for GI: 254780382 and conserved domain: PRK11634
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional.
Probab=100.00 E-value=0 Score=684.28 Aligned_cols=369 Identities=37% Similarity=0.699 Sum_probs=344.1
Q ss_pred CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECC
Q ss_conf 98436698889999999787987898999999999769979998279851789999999999860652147827999828
Q gi|254780382|r 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80 (465)
Q Consensus 1 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~P 80 (465)
T Consensus 6 ~sF~~lgL~~~ll~aL~~~Gf~~PTpIQ~~aIP~iL~GkDvi~~AqTGSGKTlAFlLPiL~~l~~~---~~~pqaLIL~P 82 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE---LKAPQILVLAP 82 (629)
T ss_pred CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHC---CCCCCEEEECC
T ss_conf 987767989999999998799999999999999996799889978884789999999999986623---68986899789
Q ss_pred CHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCC
Q ss_conf 5899999999987410233-322100001222222222221011221022102333320000001210010255100000
Q gi|254780382|r 81 TRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRML 159 (465)
Q Consensus 81 treLa~Qi~~~~~~~~~~~-~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l~ 159 (465)
T Consensus 83 TRELA~QV~~~~~~l~~~~~~i~v~~l~GG~~~~~q~~~L~~g~~IVVgTPGRL~d~l~~~~l~L~~l~~lVLDEAD~mL 162 (629)
T PRK11634 83 TRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEML 162 (629)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCHHHCCEEEEECHHHHC
T ss_conf 98999999999999972179977999989977899999862799999969899999997296412007678986715533
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 00100357887543102222233343211222211112222210013444321234642111112222110244432101
Q gi|254780382|r 160 DMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL 239 (465)
Q Consensus 160 ~~gf~~~i~~i~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~~~~~~~~~~~~~k~~~l~~l~ 239 (465)
T Consensus 163 ~~gF~~di~~Il~~lp~~~Qt~LfSATmp~~i~~la~~~l~~P~~i~i~~~~~t~~~i~q~~~~v~~--~~K~~aL~~~L 240 (629)
T PRK11634 163 RMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG--MRKNEALVRFL 240 (629)
T ss_pred CCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEECC--HHHHHHHHHHH
T ss_conf 6365999999998674031446663146599999999875698797404555557763059999652--45799999998
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCEEEE
Q ss_conf 22345650677621344322222222223322222345420333234444201355238888466464407887650020
Q gi|254780382|r 240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN 319 (465)
Q Consensus 240 ~~~~~~~k~iIF~~t~~~~~~l~~~L~~~g~~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~GiDip~v~~VI~ 319 (465)
T Consensus 241 ~~~-~~~~~IIF~~Tk~~~~~l~~~L~~~g~~~~~LHgdm~q~~R~~~l~~Fr~g~~~ILVaTDvaARGLDi~~V~~VIN 319 (629)
T PRK11634 241 EAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN 319 (629)
T ss_pred HHC-CCCEEEEEEECHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEE
T ss_conf 615-8884899982278899999999976996576568999999999999997599988987862105577256888999
Q ss_pred ECCCCCHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf 02467789988752102458885399997788899999999999623123044636
Q gi|254780382|r 320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDL 375 (465)
Q Consensus 320 ~d~P~~~~~y~hR~GR~gR~g~~G~~i~~~~~~d~~~~~~i~~~~~~~~~~~~~~~ 375 (465)
T Consensus 320 yDlP~d~e~YVHRiGRTGRaGr~G~Aitfv~~~e~~~l~~ier~~~~~~~~~~~p~ 375 (629)
T PRK11634 320 YDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPN 375 (629)
T ss_pred ECCCCCHHHCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCEECCCCC
T ss_conf 68989743401025833168996469998888999999999999779860148969