HHsearch alignment for GI: 254780382 and conserved domain: PRK11664

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional.
Probab=99.96  E-value=5.3e-29  Score=205.97  Aligned_cols=301  Identities=21%  Similarity=0.328  Sum_probs=198.5

Q ss_pred             HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHH-HHHCCCCCCCCCCCCCCCC
Q ss_conf             999769979998279851789999999999860652147827999828589999999998-7410233322100001222
Q gi|254780382|r   33 PLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNF-EKYGKNYNLTVALLIGGIP  111 (465)
Q Consensus        33 ~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~-~~~~~~~~l~~~~~~gg~~  111 (465)
T Consensus        15 ~~l~~~~~~vl~a~tGsGKtT--qvP~-~ll~~~~--~~g-~I~~~qPRR~AA~s~A~RvA~e~~e~~G~~VGY~vR~e~   88 (812)
T PRK11664         15 TALKTAPQVLLKAPTGAGKST--WLPL-QLLQQGG--ING-KIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAES   88 (812)
T ss_pred             HHHHHCCEEEEEECCCCCHHH--HHHH-HHHHCCC--CCC-CEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf             999979979999089999899--9999-9996468--899-389938839999999999999729999986757825677


Q ss_pred             CCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCC-CCCCCH-HHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             22222222101122102210233332000000121001025510000-000100-3578875431022222333432112
Q gi|254780382|r  112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM-LDMGFI-PYIQNITSLVPFTRQTLLFSATMTD  189 (465)
Q Consensus       112 ~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l-~~~gf~-~~i~~i~~~~~~~~q~i~~SAT~~~  189 (465)
T Consensus        89 ~~------s~~Tri~~~T~GiLlr~l~~dp-~L~~~~~vI~DE~HER~l~~Dl~l~l~~~~~~~~r~dLklvvMSATld~  161 (812)
T PRK11664         89 KV------GPNTRLEVVTEGILTRMIQRDP-ELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDN  161 (812)
T ss_pred             CC------CCCCEEEEECHHHHHHHHHHCC-CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCH
T ss_conf             88------9985799975589999972497-7677888999575468751899999999999861898289998478884


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH----HHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf             222111122222100134443212346421111122221102----4443210122345650677621344322222222
Q gi|254780382|r  190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK----CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSL  265 (465)
Q Consensus       190 ~v~~l~~~~l~~~~~i~v~~~~~~~~~i~~~~~~~~~~~~~k----~~~l~~l~~~~~~~~k~iIF~~t~~~~~~l~~~L  265 (465)
T Consensus       162 ~--~~-~~~~~~~~~i~~~gr~f---pV~~~y~~~~~~-~~~~~~~~~~i~~~~~--~~~G~iLvFLPG~~EI~~~~~~L  232 (812)
T PRK11664        162 D--RL-QQLLPDAPYIESEGRSF---PVERRYQPLPAH-QRFDEAVAVATAELLR--QESGSLLLFLPGVGEIQRVQEQL  232 (812)
T ss_pred             H--HH-HHHCCCCCEEEECCCCC---CEEEEECCCCCC-CHHHHHHHHHHHHHHH--CCCCCEEEECCCHHHHHHHHHHH
T ss_conf             8--89-97589998898787433---115785468852-0699999999999973--58998899769989999999998


Q ss_pred             CC---CCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCEEEE--------ECC----------CC
Q ss_conf             22---3322222345420333234444201355238888466464407887650020--------024----------67
Q gi|254780382|r  266 EK---QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN--------FDV----------PN  324 (465)
Q Consensus       266 ~~---~g~~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~GiDip~v~~VI~--------~d~----------P~  324 (465)
T Consensus       233 ~~~~~~~~~i~pL~g~l~~~~Q~~~~~~~~~g~rKvIlaTnIAEtSlTI~gV~~VIDsG~~r~~~~d~~~g~~~L~~~~i  312 (812)
T PRK11664        233 ASRVGSDVLLCPLYGALSLAEQQKAILPAPAGMRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLETQRI  312 (812)
T ss_pred             HHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCCHHCEEEECCEEEEEECHHHHHHEECCCCCCCEEEEEEC
T ss_conf             63355780899644789988987760679999537999502000202017814897402234432343579756767704


Q ss_pred             CHHHHHHHHHCCCCCCCCEEEEEEECHHHHHH
Q ss_conf             78998875210245888539999778889999
Q gi|254780382|r  325 RAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH  356 (465)
Q Consensus       325 ~~~~y~hR~GR~gR~g~~G~~i~~~~~~d~~~  356 (465)
T Consensus       313 Skasa~QRaGRAGR~-~pG~cyRL~s~~~~~~  343 (812)
T PRK11664        313 SQASMTQRAGRAGRL-EPGICLHLYAKEQAER  343 (812)
T ss_pred             CHHHHHCCCCCCCCC-CCCEEEEEECHHHHHH
T ss_conf             544353136767888-9970787335988852