HHsearch alignment for GI: 254780382 and conserved domain: PRK11664
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional.
Probab=99.96 E-value=5.3e-29 Score=205.97 Aligned_cols=301 Identities=21% Similarity=0.328 Sum_probs=198.5
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHH-HHHCCCCCCCCCCCCCCCC
Q ss_conf 999769979998279851789999999999860652147827999828589999999998-7410233322100001222
Q gi|254780382|r 33 PLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNF-EKYGKNYNLTVALLIGGIP 111 (465)
Q Consensus 33 ~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~-~~~~~~~~l~~~~~~gg~~ 111 (465)
T Consensus 15 ~~l~~~~~~vl~a~tGsGKtT--qvP~-~ll~~~~--~~g-~I~~~qPRR~AA~s~A~RvA~e~~e~~G~~VGY~vR~e~ 88 (812)
T PRK11664 15 TALKTAPQVLLKAPTGAGKST--WLPL-QLLQQGG--ING-KIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAES 88 (812)
T ss_pred HHHHHCCEEEEEECCCCCHHH--HHHH-HHHHCCC--CCC-CEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 999979979999089999899--9999-9996468--899-389938839999999999999729999986757825677
Q ss_pred CCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCC-CCCCCH-HHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 22222222101122102210233332000000121001025510000-000100-3578875431022222333432112
Q gi|254780382|r 112 FEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM-LDMGFI-PYIQNITSLVPFTRQTLLFSATMTD 189 (465)
Q Consensus 112 ~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l-~~~gf~-~~i~~i~~~~~~~~q~i~~SAT~~~ 189 (465)
T Consensus 89 ~~------s~~Tri~~~T~GiLlr~l~~dp-~L~~~~~vI~DE~HER~l~~Dl~l~l~~~~~~~~r~dLklvvMSATld~ 161 (812)
T PRK11664 89 KV------GPNTRLEVVTEGILTRMIQRDP-ELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDN 161 (812)
T ss_pred CC------CCCCEEEEECHHHHHHHHHHCC-CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCH
T ss_conf 88------9985799975589999972497-7677888999575468751899999999999861898289998478884
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH----HHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 222111122222100134443212346421111122221102----4443210122345650677621344322222222
Q gi|254780382|r 190 ELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK----CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSL 265 (465)
Q Consensus 190 ~v~~l~~~~l~~~~~i~v~~~~~~~~~i~~~~~~~~~~~~~k----~~~l~~l~~~~~~~~k~iIF~~t~~~~~~l~~~L 265 (465)
T Consensus 162 ~--~~-~~~~~~~~~i~~~gr~f---pV~~~y~~~~~~-~~~~~~~~~~i~~~~~--~~~G~iLvFLPG~~EI~~~~~~L 232 (812)
T PRK11664 162 D--RL-QQLLPDAPYIESEGRSF---PVERRYQPLPAH-QRFDEAVAVATAELLR--QESGSLLLFLPGVGEIQRVQEQL 232 (812)
T ss_pred H--HH-HHHCCCCCEEEECCCCC---CEEEEECCCCCC-CHHHHHHHHHHHHHHH--CCCCCEEEECCCHHHHHHHHHHH
T ss_conf 8--89-97589998898787433---115785468852-0699999999999973--58998899769989999999998
Q ss_pred CC---CCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCEEEE--------ECC----------CC
Q ss_conf 22---3322222345420333234444201355238888466464407887650020--------024----------67
Q gi|254780382|r 266 EK---QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN--------FDV----------PN 324 (465)
Q Consensus 266 ~~---~g~~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~GiDip~v~~VI~--------~d~----------P~ 324 (465)
T Consensus 233 ~~~~~~~~~i~pL~g~l~~~~Q~~~~~~~~~g~rKvIlaTnIAEtSlTI~gV~~VIDsG~~r~~~~d~~~g~~~L~~~~i 312 (812)
T PRK11664 233 ASRVGSDVLLCPLYGALSLAEQQKAILPAPAGMRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLETQRI 312 (812)
T ss_pred HHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCCHHCEEEECCEEEEEECHHHHHHEECCCCCCCEEEEEEC
T ss_conf 63355780899644789988987760679999537999502000202017814897402234432343579756767704
Q ss_pred CHHHHHHHHHCCCCCCCCEEEEEEECHHHHHH
Q ss_conf 78998875210245888539999778889999
Q gi|254780382|r 325 RAENYIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 (465)
Q Consensus 325 ~~~~y~hR~GR~gR~g~~G~~i~~~~~~d~~~ 356 (465)
T Consensus 313 Skasa~QRaGRAGR~-~pG~cyRL~s~~~~~~ 343 (812)
T PRK11664 313 SQASMTQRAGRAGRL-EPGICLHLYAKEQAER 343 (812)
T ss_pred CHHHHHCCCCCCCCC-CCCEEEEEECHHHHHH
T ss_conf 544353136767888-9970787335988852