HHsearch alignment for GI: 254780382 and conserved domain: PRK11776
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional.
Probab=100.00 E-value=0 Score=682.62 Aligned_cols=366 Identities=40% Similarity=0.662 Sum_probs=340.3
Q ss_pred CHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCC
Q ss_conf 84366988899999997879878989999999997699799982798517899999999998606521478279998285
Q gi|254780382|r 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPT 81 (465)
Q Consensus 2 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~Pt 81 (465)
T Consensus 5 sF~~l~L~~~ll~aL~~~G~~~pTpIQ~~aIP~il~G~Dvi~~A~TGSGKTlAfllPil~~l~~---~~~~~qaLIL~PT 81 (459)
T PRK11776 5 AFSTLPLPPALLANLDELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDV---KRFRVQALVLCPT 81 (459)
T ss_pred CHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCC---CCCCCCEEEEECH
T ss_conf 8634897999999999779999998999999999779988998899858999999999984113---6789859999675
Q ss_pred HHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 899999999987410233-3221000012222222222210112210221023333200000012100102551000000
Q gi|254780382|r 82 RELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD 160 (465)
Q Consensus 82 reLa~Qi~~~~~~~~~~~-~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l~~ 160 (465)
T Consensus 82 RELa~QV~~~~~~l~~~~~~ikv~~l~GG~~~~~q~~~L~~~~~IvV~TPGRl~d~l~~~~l~l~~v~~lVlDEAD~mLd 161 (459)
T PRK11776 82 RELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIGSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLD 161 (459)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCEEEEEEECCHHHHC
T ss_conf 99999999999999850588259999899327999999746999999895899988751663223103899706245432
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 01003578875431022222333432112222111122222100134443212346421111122221102444321012
Q gi|254780382|r 161 MGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ 240 (465)
Q Consensus 161 ~gf~~~i~~i~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~~~~~~~~~~~~~k~~~l~~l~~ 240 (465)
T Consensus 162 ~gF~~~i~~Il~~~p~~rQ~~lfSAT~p~~i~~l~~~~l~~p~~i~v~~~~-~~~~I~q~~~~v~--~~~K~~~L~~ll~ 238 (459)
T PRK11776 162 MGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISARFQRDPVEVKVESTH-DDSTIEQRFYEVD--PDERLPALQRLLL 238 (459)
T ss_pred CCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCC-CCCCCEEEEEEEC--HHHHHHHHHHHHH
T ss_conf 786688999998688130268884568989999999977898999967877-7986379999977--1878999999997
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCEEEEE
Q ss_conf 23456506776213443222222222233222223454203332344442013552388884664644078876500200
Q gi|254780382|r 241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNF 320 (465)
Q Consensus 241 ~~~~~~k~iIF~~t~~~~~~l~~~L~~~g~~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~GiDip~v~~VI~~ 320 (465)
T Consensus 239 ~~-~~~~~IIFcntk~~v~~l~~~L~~~g~~~~~lHg~m~q~~R~~~l~~F~~g~~~iLVaTDvaaRGIDi~~V~~VIny 317 (459)
T PRK11776 239 HY-RPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKSLEAVINY 317 (459)
T ss_pred HC-CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEE
T ss_conf 36-87660376174899999999998679968998799999999999999977999799881043476771359889997
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 246778998875210245888539999778889999999999962312304463
Q gi|254780382|r 321 DVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD 374 (465)
Q Consensus 321 d~P~~~~~y~hR~GR~gR~g~~G~~i~~~~~~d~~~~~~i~~~~~~~~~~~~~~ 374 (465)
T Consensus 318 DlP~~~e~YvHRiGRTGRaG~~G~ait~vt~~e~~~l~~ie~~~~~~i~~~~~p 371 (459)
T PRK11776 318 ELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRAAAIEDYLGRKLNWEPLP 371 (459)
T ss_pred CCCCCHHHHHHCCCHHHCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 898974552020525137899657999986899999999999978998641699