HHsearch alignment for GI: 254780382 and conserved domain: PRK11776

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional.
Probab=100.00  E-value=0  Score=682.62  Aligned_cols=366  Identities=40%  Similarity=0.662  Sum_probs=340.3

Q ss_pred             CHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCC
Q ss_conf             84366988899999997879878989999999997699799982798517899999999998606521478279998285
Q gi|254780382|r    2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPT   81 (465)
Q Consensus         2 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~Pt   81 (465)
T Consensus         5 sF~~l~L~~~ll~aL~~~G~~~pTpIQ~~aIP~il~G~Dvi~~A~TGSGKTlAfllPil~~l~~---~~~~~qaLIL~PT   81 (459)
T PRK11776          5 AFSTLPLPPALLANLDELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDV---KRFRVQALVLCPT   81 (459)
T ss_pred             CHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCC---CCCCCCEEEEECH
T ss_conf             8634897999999999779999998999999999779988998899858999999999984113---6789859999675


Q ss_pred             HHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCCC
Q ss_conf             899999999987410233-3221000012222222222210112210221023333200000012100102551000000
Q gi|254780382|r   82 RELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLD  160 (465)
Q Consensus        82 reLa~Qi~~~~~~~~~~~-~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l~~  160 (465)
T Consensus        82 RELa~QV~~~~~~l~~~~~~ikv~~l~GG~~~~~q~~~L~~~~~IvV~TPGRl~d~l~~~~l~l~~v~~lVlDEAD~mLd  161 (459)
T PRK11776         82 RELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIGSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLD  161 (459)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCEEEEEEECCHHHHC
T ss_conf             99999999999999850588259999899327999999746999999895899988751663223103899706245432


Q ss_pred             CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             01003578875431022222333432112222111122222100134443212346421111122221102444321012
Q gi|254780382|r  161 MGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQ  240 (465)
Q Consensus       161 ~gf~~~i~~i~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~~~~~~~~~~~~~k~~~l~~l~~  240 (465)
T Consensus       162 ~gF~~~i~~Il~~~p~~rQ~~lfSAT~p~~i~~l~~~~l~~p~~i~v~~~~-~~~~I~q~~~~v~--~~~K~~~L~~ll~  238 (459)
T PRK11776        162 MGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISARFQRDPVEVKVESTH-DDSTIEQRFYEVD--PDERLPALQRLLL  238 (459)
T ss_pred             CCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCC-CCCCCEEEEEEEC--HHHHHHHHHHHHH
T ss_conf             786688999998688130268884568989999999977898999967877-7986379999977--1878999999997


Q ss_pred             CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCEEEEE
Q ss_conf             23456506776213443222222222233222223454203332344442013552388884664644078876500200
Q gi|254780382|r  241 SQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNF  320 (465)
Q Consensus       241 ~~~~~~k~iIF~~t~~~~~~l~~~L~~~g~~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~GiDip~v~~VI~~  320 (465)
T Consensus       239 ~~-~~~~~IIFcntk~~v~~l~~~L~~~g~~~~~lHg~m~q~~R~~~l~~F~~g~~~iLVaTDvaaRGIDi~~V~~VIny  317 (459)
T PRK11776        239 HY-RPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKSLEAVINY  317 (459)
T ss_pred             HC-CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEE
T ss_conf             36-87660376174899999999998679968998799999999999999977999799881043476771359889997


Q ss_pred             CCCCCHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             246778998875210245888539999778889999999999962312304463
Q gi|254780382|r  321 DVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGD  374 (465)
Q Consensus       321 d~P~~~~~y~hR~GR~gR~g~~G~~i~~~~~~d~~~~~~i~~~~~~~~~~~~~~  374 (465)
T Consensus       318 DlP~~~e~YvHRiGRTGRaG~~G~ait~vt~~e~~~l~~ie~~~~~~i~~~~~p  371 (459)
T PRK11776        318 ELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRAAAIEDYLGRKLNWEPLP  371 (459)
T ss_pred             CCCCCHHHHHHCCCHHHCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             898974552020525137899657999986899999999999978998641699