HHsearch alignment for GI: 254780382 and conserved domain: PRK12904
>PRK12904 preprotein translocase subunit SecA; Reviewed.
Probab=99.83 E-value=1.6e-19 Score=144.91 Aligned_cols=322 Identities=18% Similarity=0.239 Sum_probs=187.0
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCC
Q ss_conf 87987898999999999769979998279851789999999999860652147827999828589999999998741023
Q gi|254780382|r 19 AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN 98 (465)
Q Consensus 19 ~~~~~pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~~~~ 98 (465)
T Consensus 78 lg~~-~~dvQl~gg~~l~~g~--iaEM~TGEGKTL~atlp~ylnal~g~------gvhvvTvNdYLA~RDa~~m~~~~~~ 148 (833)
T PRK12904 78 LGMR-HFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTGK------GVHVVTVNDYLAKRDAEWMGPLYNF 148 (833)
T ss_pred CCCC-CCHHHHHHHHHHHCCC--EEEEECCCCHHHHHHHHHHHHHHCCC------CEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 5897-6478999899994695--24650688589999999999973699------8199815557778779999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHH-HHHHHCCC------CCCCCCEEECCCCCCCCC-CCC--------
Q ss_conf 33221000012222222222210112210221023-33320000------001210010255100000-001--------
Q gi|254780382|r 99 YNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI-LDHFNRGK------LLMNNIEILVIDEADRML-DMG-------- 162 (465)
Q Consensus 99 ~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl-~~~l~~~~------~~l~~~~~lViDEah~l~-~~g-------- 162 (465)
T Consensus 149 lGltvg~i~~~~~~~~--r~~aY~~ditY~tn~e~gFDyLrDnm~~~~~~~v~r~~~~aivDE~DSiLiDeArtPLiisg 226 (833)
T PRK12904 149 LGLSVGVILSGMSPEE--RREAYAADITYGTNNEFGFDYLRDNMVFSLEDRVQRGLNYAIVDEVDSILIDEARTPLIISG 226 (833)
T ss_pred HCCEEEEECCCCCHHH--HHHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHEEECCCCCEEEEC
T ss_conf 1978804389998399--99986377134125432454125554378898750125726886411320132677738867
Q ss_pred -------CHHHHHHHHHHHCCC--------CCCCCCCCC-------------C-C-CC------CCC-C-CCC-CCCCCC
Q ss_conf -------003578875431022--------222333432-------------1-1-22------221-1-112-222210
Q gi|254780382|r 163 -------FIPYIQNITSLVPFT--------RQTLLFSAT-------------M-T-DE------LQK-V-SEN-FLQNPK 203 (465)
Q Consensus 163 -------f~~~i~~i~~~~~~~--------~q~i~~SAT-------------~-~-~~------v~~-l-~~~-~l~~~~ 203 (465)
T Consensus 227 ~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~al~A~~l~~~d~d 306 (833)
T PRK12904 227 PAEDSSELYKRANKFVPTLKKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHVNQALRAHYLFKRDVD 306 (833)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 88777799999999999747878679951557753145269999985065665784323699988999999999856870
Q ss_pred C------------------------------------CCCCCCCCCCCCC------------------------------
Q ss_conf 0------------------------------------1344432123464------------------------------
Q gi|254780382|r 204 R------------------------------------IEVNTPSSTAETI------------------------------ 217 (465)
Q Consensus 204 ~------------------------------------i~v~~~~~~~~~i------------------------------ 217 (465)
T Consensus 307 YiV~d~~v~ivDe~TGR~m~grr~~~GlhQaiEaKE~v~i~~e~~t~a~iT~Qn~Fr~y~klsGMTGTa~te~~Ef~~iY 386 (833)
T PRK12904 307 YIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIY 386 (833)
T ss_pred EEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHCCHHCCCCCCCHHHHHHHHHHH
T ss_conf 79887907998667776267870654779999998488778887001230298898327551356778677899999986
Q ss_pred ----------------CCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf ----------------2111112222110244432101223456506776213443222222222233222223454203
Q gi|254780382|r 218 ----------------EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQ 281 (465)
Q Consensus 218 ----------------~~~~~~~~~~~~~k~~~l~~l~~~~~~~~k~iIF~~t~~~~~~l~~~L~~~g~~v~~lhg~l~~ 281 (465)
T Consensus 387 ~l~V~~IPtn~p~~R~d~~d~iy~t~~~K~~ai~~ei~~~~~~gqPvLvGT~sve~SE~ls~~L~~~~i~h~vLNAk~~~ 466 (833)
T PRK12904 387 NLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTTSIEKSELLSKLLKKAGIPHNVLNAKNHE 466 (833)
T ss_pred CCCEEECCCCCCCEEEECCCCEECCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCHHHCCCCHHH
T ss_conf 88769858999854360887020799999999999999999769978994274798999999998737827761773666
Q ss_pred HHHHHHHHHHCCC-CCEEEEEHHHHHHHHCCCC--------------------------------CC-----EEEEECCC
Q ss_conf 3323444420135-5238888466464407887--------------------------------65-----00200246
Q gi|254780382|r 282 RSRMKILSNFKEG-TIQLMVASDLAARGLDIPD--------------------------------VG-----HVFNFDVP 323 (465)
Q Consensus 282 ~~R~~~~~~F~~g-~~~vLV~Td~~~~GiDip~--------------------------------v~-----~VI~~d~P 323 (465)
T Consensus 467 ~E-A~Iia~--AG~~gaVTiATNMAGRGTDI~LGGn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGL~Vigterh 543 (833)
T PRK12904 467 RE-AEIIAQ--AGRPGAVTIATNMAGRGTDIKLGGNPEMLAAGLEDETEEQIAKIKAEWQKEHEEVLEAGGLHVIGTERH 543 (833)
T ss_pred HH-HHHHHH--CCCCCCEEEEECCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 68-899995--599997687402567886821688633444432001466788888887653377886389279851433
Q ss_pred CCHHHHHHHHHCCCCCCCCEEEEEEECHHHH
Q ss_conf 7789988752102458885399997788899
Q gi|254780382|r 324 NRAENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 (465)
Q Consensus 324 ~~~~~y~hR~GR~gR~g~~G~~i~~~~~~d~ 354 (465)
T Consensus 544 esrRiD~QLrGR~GRQGDpG~s~f~lSleDd 574 (833)
T PRK12904 544 ESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 574 (833)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCEEEEECCHH
T ss_conf 3466787861221456899853265412089