HHsearch alignment for GI: 254780382 and conserved domain: PRK13709

>PRK13709 conjugal transfer nickase/helicase TraI; Provisional.
Probab=91.88  E-value=0.79  Score=24.23  Aligned_cols=64  Identities=27%  Similarity=0.345  Sum_probs=45.3

Q ss_pred             CCCCCCHHHHHHHHHHHCCCC--EEEECCCCCCHHHHH--HHHHHHHHHCCCCCCCCCEEEEECCCHHHHHH
Q ss_conf             798789899999999976997--999827985178999--99999998606521478279998285899999
Q gi|254780382|r   20 GYVKPTPIQIKTIPLVLQRHD--VCGIAQTGTGKTASF--VLPMLTILEKGRARVRMPRTLILEPTRELAAQ   87 (465)
Q Consensus        20 ~~~~pt~iQ~~~i~~~l~g~d--vi~~apTGsGKT~~~--~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Q   87 (465)
T Consensus       965 ~l~~LT~GQK~At~LIltT~DRFvaIQGyAGVGKTTql~avi~ai~tl~----~~~rpqViGLAPTH~AV~E 1032 (1756)
T PRK13709        965 LMEKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLP----ESERPRVVGLGPTHRAVGE 1032 (1756)
T ss_pred             HHCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCC----CCCCCCEEEECCHHHHHHH
T ss_conf             6635785778777563247872599870355666778999999997255----1358726756751789999