HHsearch alignment for GI: 254780382 and conserved domain: PRK13709
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional.
Probab=91.88 E-value=0.79 Score=24.23 Aligned_cols=64 Identities=27% Similarity=0.345 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHHHHHCCCC--EEEECCCCCCHHHHH--HHHHHHHHHCCCCCCCCCEEEEECCCHHHHHH
Q ss_conf 798789899999999976997--999827985178999--99999998606521478279998285899999
Q gi|254780382|r 20 GYVKPTPIQIKTIPLVLQRHD--VCGIAQTGTGKTASF--VLPMLTILEKGRARVRMPRTLILEPTRELAAQ 87 (465)
Q Consensus 20 ~~~~pt~iQ~~~i~~~l~g~d--vi~~apTGsGKT~~~--~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Q 87 (465)
T Consensus 965 ~l~~LT~GQK~At~LIltT~DRFvaIQGyAGVGKTTql~avi~ai~tl~----~~~rpqViGLAPTH~AV~E 1032 (1756)
T PRK13709 965 LMEKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLP----ESERPRVVGLGPTHRAVGE 1032 (1756)
T ss_pred HHCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCC----CCCCCCEEEECCHHHHHHH
T ss_conf 6635785778777563247872599870355666778999999997255----1358726756751789999