HHsearch alignment for GI: 254780382 and conserved domain: PRK13826
>PRK13826 Dtr system oriT relaxase; Provisional.
Probab=95.52 E-value=0.19 Score=28.27 Aligned_cols=114 Identities=19% Similarity=0.186 Sum_probs=62.8
Q ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCE-EEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHH
Q ss_conf 698889999999787987898999999999769979-9982798517899999999998606521478279998285899
Q gi|254780382|r 6 LGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDV-CGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTREL 84 (465)
Q Consensus 6 l~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~l~g~dv-i~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreL 84 (465)
T Consensus 365 h~V~~~~~~~a~~~-~~~Ls~EQ~~Av~hiT~~~~Ia~VvG~AGaGKSt--mL~aARea----wEa~GyrV~GaALsGk- 436 (1102)
T PRK13826 365 HGVREAVLAATFAR-HARLSDEQKTAIEHVAGAERIAAVIGRAGAGKTT--MMKAAREA----WEAAGYRVVGGALAGK- 436 (1102)
T ss_pred CCCCHHHHHHHHHH-HCCCCHHHHHHHHHHCCCCCEEEEEECCCCCHHH--HHHHHHHH----HHHCCCEEEEECCCHH-
T ss_conf 78767899999850-2138999999999853788668998428887889--99999999----9977977980150078-
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCC
Q ss_conf 9999999874102333221000012222222222210112210221023333200000012100102551000
Q gi|254780382|r 85 AAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157 (465)
Q Consensus 85 a~Qi~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~ 157 (465)
T Consensus 437 ------AAegLe~~sGI~SrTl------------------------As~e~~w~~gr~~L~~~dVlVIDEAGM 479 (1102)
T PRK13826 437 ------AAEGLEKEAGIASRTL------------------------SSWELRWNQGRDQLDNKTVFVLDEAGM 479 (1102)
T ss_pred ------HHHHHHHCCCCCCHHH------------------------HHHHHHHCCCCCCCCCCCEEEEECCCC
T ss_conf ------9997753469530338------------------------999987435865567873899845556