HHsearch alignment for GI: 254780382 and conserved domain: PRK13889
>PRK13889 conjugal transfer relaxase TraA; Provisional.
Probab=95.63 E-value=0.1 Score=29.92 Aligned_cols=70 Identities=19% Similarity=0.075 Sum_probs=42.4
Q ss_pred CCCCHHHHH-HHHH---CCCCCCCHHHHHHHHHHHCCCCE-EEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECC
Q ss_conf 698889999-9997---87987898999999999769979-998279851789999999999860652147827999828
Q gi|254780382|r 6 LGLSPKVVC-AVLD---AGYVKPTPIQIKTIPLVLQRHDV-CGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP 80 (465)
Q Consensus 6 l~l~~~l~~-~l~~---~~~~~pt~iQ~~~i~~~l~g~dv-i~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~P 80 (465)
T Consensus 326 h~V~~~~~~~a~~~~~~~~~~-Ls~EQ~~A~~hiT~~~~iavVvG~AGtGKSt--mL~aARea----wEa~GyrV~GaAL 398 (992)
T PRK13889 326 HEVSDADREAALARAEARGLV-LSGEQADALAHVTDGRDLGVVVGYAGTGKSA--MLGVAREA----WEAAGYEVRGAAL 398 (992)
T ss_pred CCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHCCCCCEEEEEECCCCCHHH--HHHHHHHH----HHHCCCEEEEECC
T ss_conf 788888999999865532688-7999999999864789758998338887889--99999999----9977988981150
Q ss_pred CH
Q ss_conf 58
Q gi|254780382|r 81 TR 82 (465)
Q Consensus 81 tr 82 (465)
T Consensus 399 sG 400 (992)
T PRK13889 399 SG 400 (992)
T ss_pred CH
T ss_conf 06