HHsearch alignment for GI: 254780382 and conserved domain: TIGR00631
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=100.00 E-value=5.4e-32 Score=225.28 Aligned_cols=187 Identities=21% Similarity=0.261 Sum_probs=142.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf 22223334321122221111222221001344432123464211111222211024443210122345650677621344
Q gi|254780382|r 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK 256 (465)
Q Consensus 177 ~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~~~~~~~~~~~~~k~~~l~~l~~~~~~~~k~iIF~~t~~ 256 (465)
T Consensus 387 ~~Q~vyVSATPG~~E~e~S~~~-----vv---EQiiRPTGLlDP~i~VRP~~gQvdDL~~EI~~R~~~~ERvLVTTLTKk 458 (667)
T TIGR00631 387 INQVVYVSATPGDYELEQSGGN-----VV---EQIIRPTGLLDPEIEVRPTDGQVDDLLSEIRQRVARNERVLVTTLTKK 458 (667)
T ss_pred CCCEEEEECCCCHHHHHHHCCC-----EE---EEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEHHHH
T ss_conf 5988999638858999732691-----58---998737786488368835851588889999999972894899820167
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCEEEEEC-----CCCCHHHHHH
Q ss_conf 32222222222332222234542033323444420135523888846646440788765002002-----4677899887
Q gi|254780382|r 257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFD-----VPNRAENYIH 331 (465)
Q Consensus 257 ~~~~l~~~L~~~g~~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~GiDip~v~~VI~~d-----~P~~~~~y~h 331 (465)
T Consensus 459 MAEdLTdYl~E~Gikv~YLHSeIdt~ER~eiirdLR~G~fDVLVGINLLREGLDlPEVSLVAILDADKEGFLRSerSLIQ 538 (667)
T TIGR00631 459 MAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQ 538 (667)
T ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHH
T ss_conf 78899999705883798714557899999999984478840886000200246511488997632788899866302788
Q ss_pred HHHCCCCCCCCEEEEEEECH---------HHHHHHHHHHHHHCCCCCCCC
Q ss_conf 52102458885399997788---------899999999999623123044
Q gi|254780382|r 332 RIGRTGRAGRHGKAFTLVAK---------EDIKHIDAIEKLIEKKVDWLN 372 (465)
Q Consensus 332 R~GR~gR~g~~G~~i~~~~~---------~d~~~~~~i~~~~~~~~~~~~ 372 (465)
T Consensus 539 TIGRAAR-N~~G~VilYAD~iT~sM~~AI~ET~RRR~~Q~~YNe~HgItP 587 (667)
T TIGR00631 539 TIGRAAR-NVNGKVILYADKITDSMQKAIEETERRRKIQIAYNEEHGITP 587 (667)
T ss_pred HHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9888752-579659997287007899999987888999999997538978