HHsearch alignment for GI: 254780382 and conserved domain: TIGR00631

>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=100.00  E-value=5.4e-32  Score=225.28  Aligned_cols=187  Identities=21%  Similarity=0.261  Sum_probs=142.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf             22223334321122221111222221001344432123464211111222211024443210122345650677621344
Q gi|254780382|r  177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKK  256 (465)
Q Consensus       177 ~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~~~~~~~~~~~~~k~~~l~~l~~~~~~~~k~iIF~~t~~  256 (465)
T Consensus       387 ~~Q~vyVSATPG~~E~e~S~~~-----vv---EQiiRPTGLlDP~i~VRP~~gQvdDL~~EI~~R~~~~ERvLVTTLTKk  458 (667)
T TIGR00631       387 INQVVYVSATPGDYELEQSGGN-----VV---EQIIRPTGLLDPEIEVRPTDGQVDDLLSEIRQRVARNERVLVTTLTKK  458 (667)
T ss_pred             CCCEEEEECCCCHHHHHHHCCC-----EE---EEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEHHHH
T ss_conf             5988999638858999732691-----58---998737786488368835851588889999999972894899820167


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCEEEEEC-----CCCCHHHHHH
Q ss_conf             32222222222332222234542033323444420135523888846646440788765002002-----4677899887
Q gi|254780382|r  257 NVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFD-----VPNRAENYIH  331 (465)
Q Consensus       257 ~~~~l~~~L~~~g~~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~GiDip~v~~VI~~d-----~P~~~~~y~h  331 (465)
T Consensus       459 MAEdLTdYl~E~Gikv~YLHSeIdt~ER~eiirdLR~G~fDVLVGINLLREGLDlPEVSLVAILDADKEGFLRSerSLIQ  538 (667)
T TIGR00631       459 MAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQ  538 (667)
T ss_pred             HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHH
T ss_conf             78899999705883798714557899999999984478840886000200246511488997632788899866302788


Q ss_pred             HHHCCCCCCCCEEEEEEECH---------HHHHHHHHHHHHHCCCCCCCC
Q ss_conf             52102458885399997788---------899999999999623123044
Q gi|254780382|r  332 RIGRTGRAGRHGKAFTLVAK---------EDIKHIDAIEKLIEKKVDWLN  372 (465)
Q Consensus       332 R~GR~gR~g~~G~~i~~~~~---------~d~~~~~~i~~~~~~~~~~~~  372 (465)
T Consensus       539 TIGRAAR-N~~G~VilYAD~iT~sM~~AI~ET~RRR~~Q~~YNe~HgItP  587 (667)
T TIGR00631       539 TIGRAAR-NVNGKVILYADKITDSMQKAIEETERRRKIQIAYNEEHGITP  587 (667)
T ss_pred             HHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             9888752-579659997287007899999987888999999997538978