HHsearch alignment for GI: 254780382 and conserved domain: TIGR00631
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=90.65 E-value=0.099 Score=30.04 Aligned_cols=66 Identities=27% Similarity=0.418 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHH----CC-CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCC
Q ss_conf 8989999999997----69-979998279851789999999999860652147827999828589999999998741023
Q gi|254780382|r 24 PTPIQIKTIPLVL----QR-HDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN 98 (465)
Q Consensus 24 pt~iQ~~~i~~~l----~g-~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~~~~ 98 (465)
T Consensus 10 P~GDQP~AI~~L~~~l~~G~~~QtLLGvTGsGKTFT~An-VIa~~-------~rP-TLV~aHNKTLAAQLY~EfKefFPe 80 (667)
T TIGR00631 10 PAGDQPKAIAKLVEGLEAGEKEQTLLGVTGSGKTFTMAN-VIAQV-------QRP-TLVLAHNKTLAAQLYNEFKEFFPE 80 (667)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHH-HHHHH-------CCC-EEEECCCHHHHHHHHHHHHHHCCC
T ss_conf 678818999999999856887147853214862788989-99984-------798-499857776799999999863867