HHsearch alignment for GI: 254780382 and conserved domain: TIGR01448
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=97.80 E-value=0.00023 Score=47.05 Aligned_cols=139 Identities=18% Similarity=0.196 Sum_probs=78.3
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHH--HHHHHHHHHHCC----CCCCCCCEEEEEC-CCHHHHHHHHHH
Q ss_conf 879878989999999997699799982798517899--999999998606----5214782799982-858999999999
Q gi|254780382|r 19 AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTAS--FVLPMLTILEKG----RARVRMPRTLILE-PTRELAAQVADN 91 (465)
Q Consensus 19 ~~~~~pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~--~~lp~l~~l~~~----~~~~~~~~~lil~-PtreLa~Qi~~~ 91 (465)
T Consensus 346 ~~~~~l~~~Qk~AL~~~~~~Kv~iLTGGPGTGKtT~t~~i~~~~~~~~gl~l~~~~~vndd~~v~LaAPTG-------rA 418 (769)
T TIGR01448 346 KLRLKLSEEQKEALKTAIQDKVVILTGGPGTGKTTITKAIIELYEELKGLDLDKDDYVNDDLPVVLAAPTG-------RA 418 (769)
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCH-------HH
T ss_conf 50677068899999998609489985778886168999999999871687755312456776488737743-------78
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 87410233322100001222222222221011221022102333320000001210010255100000001003578875
Q gi|254780382|r 92 FEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNIT 171 (465)
Q Consensus 92 ~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l~~~gf~~~i~~i~ 171 (465)
T Consensus 419 AkRl~E~TG~~a~TIHRLlG~~~~~~~---------------~~---k~~~~~~~~DL~IvDE~S-M~Dt~L---~~~lL 476 (769)
T TIGR01448 419 AKRLAEVTGLEALTIHRLLGYGSDTKS---------------EN---KNLEDPIDADLLIVDESS-MVDTWL---ASSLL 476 (769)
T ss_pred HHHCCCCCCCHHHHHHHHHCCCCCCCC---------------CC---HHHCCCCCCCEEEEECCC-HHHHHH---HHHHH
T ss_conf 885110026212347786368988873---------------21---101134787769981462-188999---99998
Q ss_pred HHHCCCCCCCCCCCC
Q ss_conf 431022222333432
Q gi|254780382|r 172 SLVPFTRQTLLFSAT 186 (465)
Q Consensus 172 ~~~~~~~q~i~~SAT 186 (465)
T Consensus 477 ~a~P~~a~lllVGD~ 491 (769)
T TIGR01448 477 AAVPDHARLLLVGDA 491 (769)
T ss_pred HHCCCCCEEEEECCC
T ss_conf 617977779888376