HHsearch alignment for GI: 254780382 and conserved domain: TIGR01967
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IPR010222 This entry represents HrpA, one of two related but uncharacterised DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterised, is about 800 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity.
Probab=99.91 E-value=3.3e-24 Score=175.10 Aligned_cols=313 Identities=20% Similarity=0.318 Sum_probs=193.0
Q ss_pred CCCCCCHH--HHHHHHHHH-CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEC--CCHHHHHHHHHH-HH
Q ss_conf 79878989--999999997-6997999827985178999999999986065214782799982--858999999999-87
Q gi|254780382|r 20 GYVKPTPI--QIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILE--PTRELAAQVADN-FE 93 (465)
Q Consensus 20 ~~~~pt~i--Q~~~i~~~l-~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~--PtreLa~Qi~~~-~~ 93 (465)
T Consensus 63 ~YPd~LPvS~kRedI~~AI~~nQVviiAGETGSGKTT--QLPKICL-----ELGrG~~GlIGHTQPRRlAAR~VA~R~Ae 135 (1320)
T TIGR01967 63 RYPDNLPVSAKREDIAKAIAENQVVIIAGETGSGKTT--QLPKICL-----ELGRGSRGLIGHTQPRRLAARSVAERVAE 135 (1320)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCC--CCHHHHH-----HHCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 0878887111189999999848989997244876202--3216777-----54278765412471468899999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCC-CCCCCCHH-HHHHHH
Q ss_conf 4102333221000012222222222210112210221023333200000012100102551000-00001003-578875
Q gi|254780382|r 94 KYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR-MLDMGFIP-YIQNIT 171 (465)
Q Consensus 94 ~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~-l~~~gf~~-~i~~i~ 171 (465)
T Consensus 136 ELgtplGe~VGYkVRF~D~v------~~~t~VKLmTDGiLLAE~Q~DR-fL~~YDTIIIDEAHERSLNIDFLLGYLK~lL 208 (1320)
T TIGR01967 136 ELGTPLGELVGYKVRFEDQV------SSNTLVKLMTDGILLAETQQDR-FLERYDTIIIDEAHERSLNIDFLLGYLKQLL 208 (1320)
T ss_pred HHCCCCCCCCCCEEEECCCC------CCCCEEEEHHHHHHHHHHHHHH-HHHHCCCEEECCHHHHHHHHHHHHHHHHHHC
T ss_conf 83889886132036631426------8854363032235899852002-2210673365112311233889998887632
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCC---------CH---HHHH
Q ss_conf 431022222333432112222111122222-----100134443212346421111122221---------10---2444
Q gi|254780382|r 172 SLVPFTRQTLLFSATMTDELQKVSENFLQN-----PKRIEVNTPSSTAETIEHCFVATYAQY---------SK---KCAL 234 (465)
Q Consensus 172 ~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~-----~~~i~v~~~~~~~~~i~~~~~~~~~~~---------~~---k~~~ 234 (465)
T Consensus 209 ~r-RPDLKiIITSATID~--ERFs~HFn~AeGkPaP-IIEVSGRTyPV-e~RYRPL~~~~~~~Gnqi~~d~d~~~ai~~A 283 (1320)
T TIGR01967 209 PR-RPDLKIIITSATIDP--ERFSRHFNNAEGKPAP-IIEVSGRTYPV-EVRYRPLVEEQEDDGNQIVIDLDQLEAILAA 283 (1320)
T ss_pred CC-CCCCCEEEECCCCCH--HHHHHHHCCCCCCCCC-EEEECCCCCCC-CEEECCCCCCCCCCCCEEEECCCHHHHHHHH
T ss_conf 66-886525740023574--4687862278889887-55527854665-1111687644488777041011278899999
Q ss_pred HHHCCCCCC----CCCEEEEEECCCCCCCCCCCCCCCC---CCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHH
Q ss_conf 321012234----5650677621344322222222223---322222345420333234444201355238888466464
Q gi|254780382|r 235 LQQLLQSQD----TMKNGIIFCNQKKNVVNLCHSLEKQ---GFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAAR 307 (465)
Q Consensus 235 l~~l~~~~~----~~~k~iIF~~t~~~~~~l~~~L~~~---g~~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~ 307 (465)
T Consensus 284 vdEL~~e~~~eGkGPGDiLIFlpGEREIRDaAE~L~k~~~rhtEIlPLYARLS~~EQ~RvF~p--HsGRRIVLaTNVAET 361 (1320)
T TIGR01967 284 VDELVAEGPDEGKGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQP--HSGRRIVLATNVAET 361 (1320)
T ss_pred HHHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEECCHHHCCHHHCCCCCCC--CCCCEEEEECCHHHH
T ss_conf 999974275557899726763788863689999984468787044055221586447440068--596234533010133
Q ss_pred HHCCCCCCEEEEEC---------------CCCC---HHHHHHHHHCCCCCCCCEEEEEEECHHHH
Q ss_conf 40788765002002---------------4677---89988752102458885399997788899
Q gi|254780382|r 308 GLDIPDVGHVFNFD---------------VPNR---AENYIHRIGRTGRAGRHGKAFTLVAKEDI 354 (465)
Q Consensus 308 GiDip~v~~VI~~d---------------~P~~---~~~y~hR~GR~gR~g~~G~~i~~~~~~d~ 354 (465)
T Consensus 362 SLTVPGI~YVIDtGtARiSRYS~RTKVQRLPIEpISQASANQRkGRCGRV~-~GICIRLYSE~DF 425 (1320)
T TIGR01967 362 SLTVPGIRYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 425 (1320)
T ss_pred HCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC-CCEEEECCCHHHH
T ss_conf 057887111356885320001003301336766031223200688754147-7704755775734