HHsearch alignment for GI: 254780382 and conserved domain: TIGR03158
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=3.1e-36 Score=252.62 Aligned_cols=291 Identities=16% Similarity=0.228 Sum_probs=173.7
Q ss_pred HHHHHHHHHCCCC--EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCC----C
Q ss_conf 9999999976997--999827985178999999999986065214782799982858999999999874102333----2
Q gi|254780382|r 28 QIKTIPLVLQRHD--VCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYN----L 101 (465)
Q Consensus 28 Q~~~i~~~l~g~d--vi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~~~~~~----l 101 (465)
T Consensus 2 q~~~~~~~~~~~~~~ivitAPTgsGKT~Aa~lp~l~~---------~~~~lyi~P~kAL~~Dq~~~l~~~~~~~~~~~~~ 72 (357)
T TIGR03158 2 QVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG---------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDV 72 (357)
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHC---------CCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 6899999976899869998999856999999999738---------9879997778999999999999999874423464
Q ss_pred CCCCCCCCCCCC----------C----------CCCCCCCHHHHHHCCCCHHHHHHHCC--------CCCCCCCEEECCC
Q ss_conf 210000122222----------2----------22222101122102210233332000--------0001210010255
Q gi|254780382|r 102 TVALLIGGIPFE----------A----------QNKKLERGADVLICTPGRILDHFNRG--------KLLMNNIEILVID 153 (465)
Q Consensus 102 ~~~~~~gg~~~~----------~----------~~~~l~~~~~IiV~TP~rl~~~l~~~--------~~~l~~~~~lViD 153 (465)
T Consensus 73 ~~~~~~~~~~~~~~~~~~d~~~~~~g~~~~~~~r~~~~~~~p~ILlTtPd~l~~~l~~~~~~~~~~~~~~~~~l~~VViD 152 (357)
T TIGR03158 73 NLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFD 152 (357)
T ss_pred CEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEE
T ss_conf 40211464323344465555343445410256654302589909992889999997620136510399998516747756
Q ss_pred CCCCCCCCCCHHH----HHH--HHHHHCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCC-------CCCCCCCCC-----
Q ss_conf 1000000010035----788--754310222223334321122221111222--22100-------134443212-----
Q gi|254780382|r 154 EADRMLDMGFIPY----IQN--ITSLVPFTRQTLLFSATMTDELQKVSENFL--QNPKR-------IEVNTPSST----- 213 (465)
Q Consensus 154 Eah~l~~~gf~~~----i~~--i~~~~~~~~q~i~~SAT~~~~v~~l~~~~l--~~~~~-------i~v~~~~~~----- 213 (465)
T Consensus 153 EiH-~y~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (357)
T TIGR03158 153 EFH-LYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKT 231 (357)
T ss_pred EEH-CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 200-0067620899999999999863368980899827998035789863234576434565444456787433345543
Q ss_pred ------CCCCCCCCCCCCC-CCCHHHHHHHHCCC--CCCCCCEEEEEECCCCCCCCCCCCCCCC--CCCCCCCCCCCCHH
Q ss_conf ------3464211111222-21102444321012--2345650677621344322222222223--32222234542033
Q gi|254780382|r 214 ------AETIEHCFVATYA-QYSKKCALLQQLLQ--SQDTMKNGIIFCNQKKNVVNLCHSLEKQ--GFSVCAIHGNIDQR 282 (465)
Q Consensus 214 ------~~~i~~~~~~~~~-~~~~k~~~l~~l~~--~~~~~~k~iIF~~t~~~~~~l~~~L~~~--g~~v~~lhg~l~~~ 282 (465)
T Consensus 232 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 311 (357)
T TIGR03158 232 QSFRPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKK 311 (357)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHCCCCHHH
T ss_conf 45544467501123466304467999999999999998526717999558999999999998633641145542556188
Q ss_pred HHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 3234444201355238888466464407887650020024677899887521024
Q gi|254780382|r 283 SRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTG 337 (465)
Q Consensus 283 ~R~~~~~~F~~g~~~vLV~Td~~~~GiDip~v~~VI~~d~P~~~~~y~hR~GR~g 337 (465)
T Consensus 312 ~re------k~~~~~~vVaTsaLElGIDi-~~d~~i--~~~~~v~sl~QR~GRaG 357 (357)
T TIGR03158 312 DRE------RAMQFDILLGTSTVDVGVDF-KRDWLI--FSARDAAAFWQRLGRLG 357 (357)
T ss_pred HHH------CCCCCCEEEECCCCEEEEEC-CCCEEE--ECCCCHHHHHHCCCCCC
T ss_conf 985------04899999987701035611-789899--58987888997266799