HHsearch alignment for GI: 254780382 and conserved domain: cd00268

>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.

Probab=91.82  E-value=0.15  Score=28.84  Aligned_cols=72  Identities=22%  Similarity=0.364  Sum_probs=51.8

Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCC----CCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEH-----HHHHHH-HCCCC
Q ss_conf             565067762134432222222222----33222223454203332344442013552388884-----664644-07887
Q gi|254780382|r  244 TMKNGIIFCNQKKNVVNLCHSLEK----QGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVAS-----DLAARG-LDIPD  313 (465)
Q Consensus       244 ~~~k~iIF~~t~~~~~~l~~~L~~----~g~~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~T-----d~~~~G-iDip~  313 (465)
T Consensus        68 ~~~~alil~PTrELa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l---~~-~~~IlI~TPgrl~~~l~~~~~~l~~  143 (203)
T cd00268          68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL---KR-GPHIVVATPGRLLDLLERGKLDLSK  143 (203)
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHH---HC-CCEEEEECCHHHHHHHHCCCCCCCC
T ss_conf             8966999968799999999999985057983899983898879999998---53-8759996818999999848865132


Q ss_pred             CCEEEE
Q ss_conf             650020
Q gi|254780382|r  314 VGHVFN  319 (465)
Q Consensus       314 v~~VI~  319 (465)
T Consensus       144 l~~lVl  149 (203)
T cd00268         144 VKYLVL  149 (203)
T ss_pred             CCEEEE
T ss_conf             248999