HHsearch alignment for GI: 254780382 and conserved domain: cd01127
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=95.59 E-value=0.024 Score=34.02 Aligned_cols=72 Identities=22% Similarity=0.312 Sum_probs=40.9
Q ss_pred HHHHHHH-CCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHH
Q ss_conf 9999997-87987898999999999769979998279851789999999999860652147827999828589999999
Q gi|254780382|r 12 VVCAVLD-AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVA 89 (465)
Q Consensus 12 l~~~l~~-~~~~~pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~ 89 (465)
T Consensus 15 l~~~~~~~~~~~~~~~i~~~p~p~~~e~~H~lv~G~tGsGKT~~i-~~li~~~~~-----rg~~~II~DpkGe~~~~fy 87 (410)
T cd01127 15 LARKLRKKDGKASPITIAGLPFPKDAEEAHTMIIGTTGTGKTTQI-RELLASIRA-----RGDRAIIYDPNGGFVSKFY 87 (410)
T ss_pred HHHHHHHHCCCCCCEEECCCCCCCCHHHCCEEEECCCCCCHHHHH-HHHHHHHHH-----CCCEEEEEECCCHHHHHHH
T ss_conf 999999863899983689862786520274799889999889999-999999998-----6990999958854999975