HHsearch alignment for GI: 254780382 and conserved domain: cd01130
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.48 E-value=0.011 Score=36.20 Aligned_cols=61 Identities=26% Similarity=0.388 Sum_probs=36.6
Q ss_pred HHHCCCCCCCHHHHHHHHHHH-CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHH
Q ss_conf 997879878989999999997-6997999827985178999999999986065214782799982858999
Q gi|254780382|r 16 VLDAGYVKPTPIQIKTIPLVL-QRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELA 85 (465)
Q Consensus 16 l~~~~~~~pt~iQ~~~i~~~l-~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa 85 (465)
T Consensus 4 lv~~G~--~~~~~~~~L~~~v~~~~nIlIsG~tGSGKTTl-l~al~~~i~~------~~rivtiEd~~El~ 65 (186)
T cd01130 4 LIAQGT--FSPLQAAYLWLAVEARKNILISGGTGSGKTTL-LNALLAFIPP------DERIITIEDTAELQ 65 (186)
T ss_pred HHHCCC--CCHHHHHHHHHHHHCCCCEEEECCCCCCHHHH-HHHHHHHCCC------CCCEEEECCCHHHC
T ss_conf 886699--99999999999998599899989999989999-9999961334------56459841535404