HHsearch alignment for GI: 254780382 and conserved domain: cd03247
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=92.10 E-value=0.44 Score=25.84 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=14.8
Q ss_pred CCCCEEEECCCCCCHHHH
Q ss_conf 699799982798517899
Q gi|254780382|r 37 QRHDVCGIAQTGTGKTAS 54 (465)
Q Consensus 37 ~g~dvi~~apTGsGKT~~ 54 (465)
T Consensus 27 ~Ge~~aivG~sGsGKSTL 44 (178)
T cd03247 27 QGEKIALLGRSGSGKSTL 44 (178)
T ss_pred CCCEEEEECCCCCHHHHH
T ss_conf 999999999998759999