HHsearch alignment for GI: 254780382 and conserved domain: pfam00176
>pfam00176 SNF2_N SNF2 family N-terminal domain. This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1).
Probab=98.90 E-value=1.1e-08 Score=74.94 Aligned_cols=156 Identities=18% Similarity=0.245 Sum_probs=88.3
Q ss_pred HHHHHHHHH----CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 999999997----6997999827985178999999999986065214782799982858999999999874102333221
Q gi|254780382|r 28 QIKTIPLVL----QRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTV 103 (465)
Q Consensus 28 Q~~~i~~~l----~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~~~~~~l~~ 103 (465)
T Consensus 2 Q~~gv~wl~~~~~~~~ggiLaDeMGLGKTiq~-ia~l~~~~~~~~--~~~~~LIV~P~-sl~~~W~~Ei~~~~~~~--~~ 75 (295)
T pfam00176 2 QLEGVNWLISLYNNGLGGILADEMGLGKTLQT-ISLLAYLKELKP--LAGPHLVVCPL-STLDNWLNEFEKWAPDL--NI 75 (295)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHH-HHHHHHHHHHCC--CCCCEEEEECH-HHHHHHHHHHHHHCCCC--CE
T ss_conf 78899999998727999897227875799999-999999998388--99988999757-88876788999867997--07
Q ss_pred CCCCCCCCCCCC--CCCC-CCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 000012222222--2222-1011221022102333320000001210010255100000001003578875431022222
Q gi|254780382|r 104 ALLIGGIPFEAQ--NKKL-ERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQT 180 (465)
Q Consensus 104 ~~~~gg~~~~~~--~~~l-~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l~~~gf~~~i~~i~~~~~~~~q~ 180 (465)
T Consensus 76 ~~~~~~~~~r~~~~~~~~~~~~~~ivitsY~~~~~~~~--~l~~~~w~~vI~DEaH~iKN~~--s~~~~a~~~l~~~-~r 150 (295)
T pfam00176 76 VVYYGDGDSRSELLRNVLRTGKFDVLITSYEYIRRDKD--ELHKANWRYVILDEGHRIKNAK--SKLSLALKSLKTN-NR 150 (295)
T ss_pred EEEEECHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHH--HHHCCCCCEEEEECCCCCCCHH--HHHHHHHHHCCCC-CE
T ss_conf 99984707689998867741688599930999997599--9840876589987620125878--8999999952358-18
Q ss_pred CCCCCCC-CCCCCCC
Q ss_conf 3334321-1222211
Q gi|254780382|r 181 LLFSATM-TDELQKV 194 (465)
Q Consensus 181 i~~SAT~-~~~v~~l 194 (465)
T Consensus 151 ~~LTGTPiqN~l~el 165 (295)
T pfam00176 151 LLLTGTPIQNNLAEL 165 (295)
T ss_pred EEEECCCCCCCHHHH
T ss_conf 998687455888999