HHsearch alignment for GI: 254780382 and conserved domain: pfam00270
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=100.00 E-value=1.4e-35 Score=248.47 Aligned_cols=166 Identities=46% Similarity=0.729 Sum_probs=149.8
Q ss_pred CHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 98999999999769979998279851789999999999860652147827999828589999999998741023332210
Q gi|254780382|r 25 TPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVA 104 (465)
Q Consensus 25 t~iQ~~~i~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~~~~~~l~~~ 104 (465)
T Consensus 1 ~~~Q~~~i~~~~~g~~~iv~~pTGsGKT~~~~~~~l~~~~~~~---~~~~~v~l~Pt~aL~~q~~~~~~~~~~~~~~~~~ 77 (167)
T pfam00270 1 TPIQAEAIPAILEGKDVLVQAPTGSGKTLAFLLPALQALLKNP---DGPQALVLAPTRELAEQIYEELKKLGKYLGLKVA 77 (167)
T ss_pred CHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC---CCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 9459999999976997899889997589999999999987477---8987999906088888999886432102676404
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 00012222222222210112210221023333200000012100102551000000010035788754310222223334
Q gi|254780382|r 105 LLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184 (465)
Q Consensus 105 ~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l~~~gf~~~i~~i~~~~~~~~q~i~~S 184 (465)
T Consensus 78 ~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lIvDE~H~~~~~~~g~~~~~il~~l~~~~q~v~~S 157 (167)
T pfam00270 78 LLYGGDSPKEQLRKLKKGPDILVGTPGRLLDLLERGGLLLKNLKLLVLDEAHRLLDQGFGDDLEEILRRLPPKRQILLLS 157 (167)
T ss_pred EECCCCCHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECHHHHHCCCHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 64178617889876405770799478999999980331211003899880886733582999999998579999789997
Q ss_pred CCCCCCCCC
Q ss_conf 321122221
Q gi|254780382|r 185 ATMTDELQK 193 (465)
Q Consensus 185 AT~~~~v~~ 193 (465)
T Consensus 158 AT~~~~~~~ 166 (167)
T pfam00270 158 ATLPRNVED 166 (167)
T ss_pred CCCCHHHHH
T ss_conf 269977854