HHsearch alignment for GI: 254780382 and conserved domain: pfam02456
>pfam02456 Adeno_IVa2 Adenovirus IVa2 protein. IVa2 protein can interact with the adenoviral packaging signal and that this interaction involves DNA sequences that have previously been demonstrated to be required for packaging. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter.
Probab=95.54 E-value=0.023 Score=34.20 Aligned_cols=38 Identities=21% Similarity=0.405 Sum_probs=22.5
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCCCCCC-EEEEECCCHHH
Q ss_conf 99827985178999999999986065214782-79998285899
Q gi|254780382|r 42 CGIAQTGTGKTASFVLPMLTILEKGRARVRMP-RTLILEPTREL 84 (465)
Q Consensus 42 i~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~-~~lil~PtreL 84 (465)
T Consensus 91 vVYGPTG~GKSQ-----LlRNlis~~lI~P~PETVfFItPq~~m 129 (370)
T pfam02456 91 VVYGPTGCGKSQ-----LLRNLLSCQLIQPIPETVFFITPQKDM 129 (370)
T ss_pred EEECCCCCCHHH-----HHHHHHHCCCCCCCCCEEEEECCCCCC
T ss_conf 998899877899-----999987346677999728997677786