HHsearch alignment for GI: 254780382 and conserved domain: pfam02534

>pfam02534 TraG TraG/TraD family. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems.

Probab=97.04  E-value=0.00092  Score=43.17  Aligned_cols=51  Identities=31%  Similarity=0.373  Sum_probs=39.3

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCC
Q ss_conf             97999827985178999999999986065214782799982858999999999874102
Q gi|254780382|r   39 HDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK   97 (465)
Q Consensus        39 ~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~~~   97 (465)
T Consensus        45 ~H~lviaptgsGKt~~~ViPnLl--~~~------~S~VV~DpKGEl~~~Ta~~r~~~G~   95 (468)
T pfam02534        45 SHVLVFAGTGSGKGVGVVIPNLL--VWK------GSIVVLDPKGELWELTSGIREKQGR   95 (468)
T ss_pred             CEEEEECCCCCCCCCCCHHHHHH--HCC------CCEEEEECCHHHHHHHHHHHHHCCC
T ss_conf             67999848999723424298885--189------9789994848899999999997799